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32
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34
replies
16k
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How To Randomly Sample A Subset Of Lines From A Bed File
bed chip-seq
updated 3.1 years ago by 44k • written 11.1 years ago by ▴ 540
1
vote
1
reply
2.9k
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Answer: A: Are HOMER aggregate proflles normalized to the read depth of each ChIP-seq sampl
updated 4.9 years ago by 44k • written 8.8 years ago by ▴ 540
0
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1
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2.2k
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Comment: C: Plot of intergenomic distances between all bound TF sites?
updated 5.0 years ago by 44k • written 9.0 years ago by ▴ 540
0
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1
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17k
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Comment: C: Sra Format Questions: How To Get A Sam File That Can Be Converted To Bam?
updated 5.1 years ago by 44k • written 10.8 years ago by ▴ 540
14
votes
8
replies
17k
views
Sra Format Questions: How To Get A Sam File That Can Be Converted To Bam?
sam sra chip-seq samtools
updated 6.8 years ago by 20 • written 10.8 years ago by ▴ 540
4
votes
4
replies
2.2k
views
Plot of intergenomic distances between all bound TF sites?
ChIP-Seq peaks
updated 2.3 years ago by 44k • written 9.0 years ago by ▴ 540
0
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0
replies
2.5k
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Comment: Comment: why only small fraction of reads from control sample of chip-seq are mapping int
updated 23 months ago by 44k • written 9.4 years ago by ▴ 540
4
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0
replies
8.1k
views
Answer: Answer: what is the motivation behind Pol2 chip-seq data?
updated 2.5 years ago by 44k • written 9.7 years ago by ▴ 540
1
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0
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2.2k
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Answer: Answer: Clearly formed IgG Peaks in CLIP-Seq
updated 2.6 years ago by 44k • written 9.7 years ago by ▴ 540
0
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1
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3.1k
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Answer: Answer: Query related to generating plots from HOMER output
updated 2.7 years ago by 44k • written 9.9 years ago by ▴ 540
2
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0
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2.2k
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Answer: Answer: upscaling ChIP-seq data
updated 2.7 years ago by 44k • written 9.9 years ago by ▴ 540
0
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0
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2.8k
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Comment: C: How to avoid problem using -size, -hist and -ghist for annotatePeaks.pl in HOMER
10.0 years ago by bede.portz ▴ 540
2
votes
1
reply
2.1k
views
How to transform Peakzilla output to one that can be displayed in the UCSC Browser
UCSC calling peakzilla ChIP-Seq browser peak
updated 3.6 years ago by 44k • written 10.1 years ago by ▴ 540
0
votes
1
reply
6.7k
views
Comment: Comment: chip-seq low signal vs background
updated 2.9 years ago by 44k • written 10.2 years ago by ▴ 540
1
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1
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6.7k
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Answer: Answer: chip-seq low signal vs background
updated 2.9 years ago by 44k • written 10.2 years ago by ▴ 540
6
votes
4
replies
9.7k
views
How Do I Search A Genome For A Known Motif, And Get An Interval File Of All Instances Of The Motif?
motif chip-seq
updated 10.6 years ago by ★ 4.5k • written 10.8 years ago by ▴ 540
0
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0
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5.9k
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Answer: A: How To Find Upstream/Downstream Bound Features With A Chip-Seq Analysis In Galax
10.7 years ago by bede.portz ▴ 540
0
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0
replies
17k
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Comment: C: Sra Format Questions: How To Get A Sam File That Can Be Converted To Bam?
10.8 years ago by bede.portz ▴ 540
0
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0
replies
4.0k
views
Comment: C: Double Peaks For Both Forward And Reverse Tags In Macs2 Model Of Chip-Seq Data -
10.9 years ago by bede.portz ▴ 540
2
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0
replies
9.8k
views
Answer: A: Chip Seq Data Analysis
10.9 years ago by bede.portz ▴ 540
2
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0
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6.9k
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Comment: C: Chips-Seq Replicates And Motif Discovery: What Is The Most Sound Way To Deal Wit
10.9 years ago by bede.portz ▴ 540
4
votes
0
replies
4.1k
views
Answer: A: Aligning Chip-Seq Reads To Custom Tss Files Using Homer
11.0 years ago by bede.portz ▴ 540
4
votes
1
reply
4.1k
views
Aligning Chip-Seq Reads To Custom Tss Files Using Homer
chip-seq clustering
11.0 years ago by bede.portz ▴ 540
1
vote
0
replies
5.5k
views
Answer: A: Number Of Transcription Factor Binding Sites In The Promoter Of A Gene
11.0 years ago by bede.portz ▴ 540
0
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0
replies
4.0k
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Comment: C: When Normalizing Chip-Seq Replicates, Is It Better To Normalize All Reads, Or On
11.0 years ago by bede.portz ▴ 540
0
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0
replies
3.8k
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Answer: A: Occurrence Of "Dead" Bioinformatics Servers/Tools
11.0 years ago by bede.portz ▴ 540
0
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1
reply
3.5k
views
Comment: C: Viewing Chip-Chip Data Within A Genome Browser
11.0 years ago by bede.portz ▴ 540
2
votes
2
replies
4.0k
views
When Normalizing Chip-Seq Replicates, Is It Better To Normalize All Reads, Or Only Reads In A Window Of Interst?
chip-seq rna-seq normalization
updated 11.0 years ago by ★ 4.3k • written 11.0 years ago by ▴ 540
4
votes
1
reply
3.3k
views
Answer: A: What Are Good Phd Programs In The Us Oriented Towards Algorithm Development?
11.1 years ago by bede.portz ▴ 540
0
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0
replies
8.7k
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Comment: C: Why Are Transcription Termination Sites (Tts) Included In The Results Of A Trans
11.1 years ago by bede.portz ▴ 540
8
votes
3
replies
8.7k
views
Why Are Transcription Termination Sites (Tts) Included In The Results Of A Transcription Start Site (Tss) Query From Ucsc?
chip-seq
updated 11.1 years ago by 101k • written 11.1 years ago by ▴ 540
0
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1
reply
5.2k
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Comment: C: Filtering Tss List To Remove Tss Within X #Bp From One Another
11.1 years ago by bede.portz ▴ 540
0
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1
reply
5.2k
views
Comment: C: Filtering Tss List To Remove Tss Within X #Bp From One Another
11.1 years ago by bede.portz ▴ 540
0
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1
reply
5.2k
views
Comment: C: Filtering Tss List To Remove Tss Within X #Bp From One Another
11.1 years ago by bede.portz ▴ 540
0
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1
reply
5.2k
views
Comment: C: Filtering Tss List To Remove Tss Within X #Bp From One Another
11.1 years ago by bede.portz ▴ 540
1
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0
replies
6.3k
views
Answer: A: In The Various Dna Sequencing Methods What Restricts The Process From Sequencing
11.1 years ago by bede.portz ▴ 540
0
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1
reply
5.2k
views
Comment: C: Filtering Tss List To Remove Tss Within X #Bp From One Another
11.1 years ago by bede.portz ▴ 540
3
votes
15
replies
5.2k
views
Filtering Tss List To Remove Tss Within X #Bp From One Another
chip-seq rna-seq
updated 11.1 years ago by 36k • written 11.1 years ago by ▴ 540
0
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0
replies
5.2k
views
Comment: C: Filtering Tss List To Remove Tss Within X #Bp From One Another
11.1 years ago by bede.portz ▴ 540
1
vote
0
replies
16k
views
Comment: C: How To Randomly Sample A Subset Of Lines From A Bed File
11.1 years ago by bede.portz ▴ 540
1
vote
1
reply
16k
views
Comment: C: How To Randomly Sample A Subset Of Lines From A Bed File
11.1 years ago by bede.portz ▴ 540
0
votes
1
reply
16k
views
Comment: C: How To Randomly Sample A Subset Of Lines From A Bed File
11.1 years ago by bede.portz ▴ 540
0
votes
0
replies
16k
views
Comment: C: How To Randomly Sample A Subset Of Lines From A Bed File
11.1 years ago by bede.portz ▴ 540
0
votes
0
replies
15k
views
Answer: A: Plotting Reads Around Tss
11.1 years ago by bede.portz ▴ 540
0
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1
reply
2.9k
views
Comment: C: Does Windowbed Extend Reads?
11.1 years ago by bede.portz ▴ 540
0
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1
reply
2.9k
views
Comment: C: Does Windowbed Extend Reads?
11.1 years ago by bede.portz ▴ 540
7
votes
5
replies
2.9k
views
Does Windowbed Extend Reads?
bedtools chip-seq
updated 11.1 years ago by 104k • written 11.1 years ago by ▴ 540
8
votes
0
replies
5.1k
views
Answer: A: Improved Peer Review Of Rna-Seq Bioinformatics In Science Publications
11.1 years ago by bede.portz ▴ 540
1
vote
1
reply
3.3k
views
Answer: A: Tool For Binning Windowbed Output For K-Means Clustering
updated 11.2 years ago by 101k • written 11.2 years ago by ▴ 540
5
votes
7
replies
3.3k
views
Tool For Binning Windowbed Output For K-Means Clustering
bedtools chip-seq clustering heatmap
11.2 years ago by bede.portz ▴ 540
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