Profile Posts Awards
Show
all questions tools blogs news tutorials forum answers comments
0
votes
0
replies
611
views
Comment: Comment: How to handle RNA seq data with unbalanced % rRNA by group?
4 weeks ago by ev97 ▴ 40
0
votes
0
replies
611
views
Comment: Comment: How to handle RNA seq data with unbalanced % rRNA by group?
4 weeks ago by ev97 ▴ 40
0
votes
1
reply
611
views
Comment: Comment: How to handle RNA seq data with unbalanced % rRNA by group?
4 weeks ago by ev97 ▴ 40
0
votes
2
replies
611
views
Comment: Comment: How to handle RNA seq data with unbalanced % rRNA by group?
4 weeks ago by ev97 ▴ 40
9
votes
10
replies
611
views
How to handle RNA seq data with unbalanced % rRNA by group?
fastqscreen rRNA DESeq2 RNAseq DGE
updated 4 weeks ago by 8.9k • written 5 weeks ago by ▴ 40
0
votes
0
replies
3.3k
views
Answer: Answer: Remove column from Seurat metadata
3 months ago by ev97 ▴ 40
0
votes
0
replies
235
views
Should I focus on genes with MGI symbols when they have several Ensembl/Entrez IDs?
biomart entrez mgi Ensembl ncbi
4 months ago by ev97 ▴ 40
0
votes
0
replies
730
views
Comment: Comment: Should I normalize and scale my data again after doing subset(seu, idents=" ") i
4 months ago by ev97 ▴ 40
0
votes
2
replies
729
views
Should I normalize and scale my data again after doing subset(seu, idents=" ") in Seurat?
normalization seurat scRNA-seq
4 months ago by ev97 ▴ 40
2
votes
3
replies
985
views
Is it possible to modify the gene names from the x-axis in Seurat::Dotplot?
seurat scRNA-seq single-cell dotplot
updated 5 months ago by 44k • written 5 months ago by ▴ 40
0
votes
0
replies
985
views
Comment: Comment: Is it possible to modify the gene names from the x-axis in Seurat::Dotplot?
5 months ago by ev97 ▴ 40
0
votes
0
replies
985
views
Comment: Comment: Is it possible to modify the gene names from the x-axis in Seurat::Dotplot?
5 months ago by ev97 ▴ 40
0
votes
0
replies
468
views
Comment: Comment: Is there any minimum number of counts in scRNAseq to consider that a gene is exp
5 months ago by ev97 ▴ 40
3
votes
2
replies
468
views
Is there any minimum number of counts in scRNAseq to consider that a gene is expressed?
scRNAseq single-cell seurat scanpy UMI
5 months ago by ev97 ▴ 40
0
votes
0
replies
236
views
Is it possible to keep gene_id and gene_name columns using Seurat::Read10X?
Seurat single-cell scRNA-seq
updated 6 months ago by 44k • written 6 months ago by ▴ 40
0
votes
0
replies
640
views
Comment: Comment: Can 5' and 3' scRNAseq be processed with the same pipeline?
6 months ago by ev97 ▴ 40
0
votes
1
reply
640
views
Comment: Comment: Can 5' and 3' scRNAseq be processed with the same pipeline?
6 months ago by ev97 ▴ 40
2
votes
4
replies
640
views
Can 5' and 3' scRNAseq be processed with the same pipeline?
singlecell seurat 10XGenomics scRNAseq
updated 6 months ago by ▴ 660 • written 6 months ago by ▴ 40
2
votes
2
replies
469
views
Removing adapters in all the RNAseq samples regardless if they have or not, is it correct?
fastqc trimming adapters cutadapt RNAseq
updated 7 months ago by ★ 6.9k • written 7 months ago by ▴ 40
0
votes
0
replies
1.1k
views
Comment: Comment: Does removal of contaminants in RNAseq data have an impact on downstream analyse
8 months ago by ev97 ▴ 40
0
votes
1
reply
1.1k
views
Comment: Comment: Does removal of contaminants in RNAseq data have an impact on downstream analyse
8 months ago by ev97 ▴ 40
0
votes
1
reply
1.1k
views
Comment: Comment: Does removal of contaminants in RNAseq data have an impact on downstream analyse
8 months ago by ev97 ▴ 40
2
votes
7
replies
1.1k
views
Does removal of contaminants in RNAseq data have an impact on downstream analyses?
RNA-seq contamination
updated 8 months ago by ▴ 420 • written 8 months ago by ▴ 40
1
vote
0
replies
900
views
Comment: Comment: 1 Bioinformatician position in San Sebastian (Spain)
9 months ago by ev97 ▴ 40
1
vote
3
replies
900
views
Job: 1 Bioinformatician position in San Sebastian (Spain)
postdoc phd proteomics scRNAseq transcriptomics
9 months ago by ev97 ▴ 40
0
votes
0
replies
785
views
Comment: Comment: Why do I get DE non-polyadenylated genes in a RNAseq with PoliA library?
10 months ago by ev97 ▴ 40
0
votes
1
reply
785
views
Comment: Comment: Why do I get DE non-polyadenylated genes in a RNAseq with PoliA library?
10 months ago by ev97 ▴ 40
2
votes
5
replies
785
views
Why do I get DE non-polyadenylated genes in a RNAseq with PoliA library?
lncRNA PoliA DGE RNAseq DESeq2
updated 10 months ago by 20k • written 10 months ago by ▴ 40
0
votes
1
reply
546
views
Comment: Comment: What do you usually use for QC using DNBseq?
10 months ago by ev97 ▴ 40
1
vote
3
replies
546
views
What do you usually use for QC using DNBseq?
DNBseq fastqc qc Illumina RNA-seq
updated 10 months ago by 147k • written 10 months ago by ▴ 40
0
votes
0
replies
576
views
Job: PhD position at CiMUS (Santiago de Compostela, Spain)
transcriptomics PhD RNA-seq Single-Cell
updated 11 months ago by 44k • written 11 months ago by ▴ 40
0
votes
0
replies
321
views
Having different % aligned reads in RPF and mRNA for TE analysis
RPF Ribo-Seq Translation TE RNA-seq
11 months ago by ev97 ▴ 40
0
votes
0
replies
1.8k
views
Comment: Comment: DNBseq vs Illumina
15 months ago by ev97 ▴ 40
6
votes
5
replies
1.8k
views
DNBseq vs Illumina
DNBseq fastq sequencing Illumina RNA-seq
15 months ago by ev97 ▴ 40
0
votes
0
replies
1.8k
views
Comment: Comment: DNBseq vs Illumina
15 months ago by ev97 ▴ 40
2
votes
2
replies
724
views
Are SAM attributes necessary if I only keep the BAM files using STAR?
BAM SAM RNA-seq STAR
updated 16 months ago by 147k • written 16 months ago by ▴ 40
0
votes
1
reply
699
views
Comment: Comment: How to check if the total million of reads that I have are the ones that I bough
16 months ago by ev97 ▴ 40
2
votes
3
replies
699
views
How to check if the total million of reads that I have are the ones that I bought?
fastq RNA-seq
updated 16 months ago by 44k • written 16 months ago by ▴ 40
0
votes
1
reply
1.2k
views
Comment: Comment: Same GEO Accession, different SRR number, how to download this RNA-seq paired-en
17 months ago by ev97 ▴ 40
2
votes
3
replies
1.2k
views
Same GEO Accession, different SRR number, how to download this RNA-seq paired-end data?
sra-toolkit fastq RNA-seq SRA
updated 17 months ago by 147k • written 17 months ago by ▴ 40
0
votes
0
replies
2.9k
views
Comment: Comment: Negative values after batch correction using removeBatchEffect from Limma
2.3 years ago by ev97 ▴ 40
0
votes
0
replies
439
views
Adjustment by several variables, sequential adjustment or combine them in a single one?
rnaseq combat-seq batch removeBatchEffect limma
2.3 years ago by ev97 ▴ 40
0
votes
0
replies
568
views
How to choose the biological variables if you want to keep all the biological signal from your data when you have to adjust by batch?
rnaseq combat-seq batch removeBatchEffect limma
2.3 years ago by ev97 ▴ 40
2
votes
4
replies
2.9k
views
Negative values after batch correction using removeBatchEffect from Limma
batch limma removeBatchEffect rna-seq batch-effect
updated 7 months ago by 44k • written 2.3 years ago by ▴ 40
0
votes
0
replies
965
views
Comment: Comment: What type of normalization does removeBatchEffect function require as the input?
2.3 years ago by ev97 ▴ 40
1
vote
2
replies
965
views
What type of normalization does removeBatchEffect function require as the input?
batch limma removeBatchEffect rna-seq batch-effect
updated 7 months ago by 44k • written 2.3 years ago by ▴ 40
7
votes
4
replies
1.6k
views
Is there any journal article to reference removeBatchEffect function from Limma?
batch removebatcheffect limma rna-seq batch-effect
updated 7 months ago by 44k • written 2.3 years ago by ▴ 40
0
votes
0
replies
1.6k
views
Comment: Comment: Is there any journal article to reference removeBatchEffect function from Limma?
2.3 years ago by ev97 ▴ 40
0
votes
1
reply
3.1k
views
Comment: Comment: How to adjust by multiple variables using ComBat-Seq?
2.3 years ago by ev97 ▴ 40
0
votes
1
reply
3.1k
views
Comment: Comment: How to adjust by multiple variables using ComBat-Seq?
2.3 years ago by ev97 ▴ 40
55 results • Page 1 of 2
Content Search
Users
Tags
Badges
Help About
FAQ
Access RSS
API
Stats

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.

Powered by the version 2.3.6