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How to filter the BAM file using barcode list produced by 10x pipelines?
list barcode
updated 21 months ago by 149k • written 2.2 years ago by ▴ 30
1
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0
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752
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Comment: Comment: How to make cut off linein cluster,
23 months ago by Info.shi ▴ 30
3
votes
2
replies
752
views
How to make cut off linein cluster,
dendogram Cutoff R
updated 23 months ago by 149k • written 23 months ago by ▴ 30
0
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1
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1.7k
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Comment: Comment: How to label by colour in PCA plot?
2.1 years ago by Info.shi ▴ 30
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1
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1.7k
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Comment: Comment: How to label by colour in PCA plot?
2.1 years ago by Info.shi ▴ 30
0
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5
replies
1.7k
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How to label by colour in PCA plot?
label PCA plot. colure
updated 2.1 years ago by 11k • written 2.1 years ago by ▴ 30
0
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1
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648
views
Why barcode list doesn't filter exactly according to the same as list?
bam barcode
2.1 years ago by Info.shi ▴ 30
0
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1
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2.0k
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Comment: Comment: how to get fastq file from cellranger?
2.2 years ago by Info.shi ▴ 30
0
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1
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2.0k
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Comment: Comment: how to get fastq file from cellranger?
2.2 years ago by Info.shi ▴ 30
0
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1
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2.0k
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Comment: Comment: how to get fastq file from cellranger?
2.2 years ago by Info.shi ▴ 30
0
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1
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2.0k
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Comment: Comment: how to get fastq file from cellranger?
2.2 years ago by Info.shi ▴ 30
0
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9
replies
2.0k
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how to get fastq file from cellranger?
Cellranger mkfastq
updated 2.2 years ago by 149k • written 2.2 years ago by ▴ 30
3
votes
3
replies
2.8k
views
Can we use UMAP clustering on bulk data?
R UMAP
updated 2.4 years ago by 44k • written 2.4 years ago by ▴ 30
1
vote
2
replies
1.2k
views
How to change gene coordinate in gtf file?
perl python R
updated 3.0 years ago by 102k • written 3.0 years ago by ▴ 30
0
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0
replies
729
views
How to call variant by --max-depth for RNAseq
bcftools Samtools
updated 20 months ago by 44k • written 3.2 years ago by ▴ 30
1
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1
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959
views
How to call variant minimum 3 read coverage to make consensus?
bcftools mpileup
updated 3.3 years ago by 102k • written 3.3 years ago by ▴ 30
0
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0
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3.5k
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Comment: Comment: What will the the classic approach is to make pairwise comparisons between th
3.3 years ago by Info.shi ▴ 30
0
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1
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3.5k
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Comment: Comment: What will the the classic approach is to make pairwise comparisons between th
3.3 years ago by Info.shi ▴ 30
0
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1
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3.5k
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Comment: Comment: What will the the classic approach is to make pairwise comparisons between th
3.3 years ago by Info.shi ▴ 30
0
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1
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3.5k
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Comment: Comment: What will the the classic approach is to make pairwise comparisons between th
3.3 years ago by Info.shi ▴ 30
0
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1
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3.5k
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Comment: Comment: What will the the classic approach is to make pairwise comparisons between th
3.3 years ago by Info.shi ▴ 30
0
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0
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3.5k
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Comment: Comment: What will the the classic approach is to make pairwise comparisons between th
3.3 years ago by Info.shi ▴ 30
0
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1
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3.5k
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Comment: Comment: What will the the classic approach is to make pairwise comparisons between th
3.3 years ago by Info.shi ▴ 30
5
votes
13
replies
3.5k
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What will the the classic approach is to make pairwise comparisons between the groups in edgeR?
edgeR
3.3 years ago by Info.shi ▴ 30
0
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1
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1.5k
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Comment: Comment: How to remove Illumina TruSeq Index adapters reverse (R2 reads )
3.4 years ago by Info.shi ▴ 30
2
votes
3
replies
1.5k
views
How to remove Illumina TruSeq Index adapters reverse (R2 reads )
Illumina adapter sequence TruSeq
updated 3.4 years ago by 149k • written 3.4 years ago by ▴ 30
3
votes
2
replies
2.2k
views
How to convert (Newick) tree topology without branch length!
sed awk perl
updated 3.8 years ago by 22k • written 3.8 years ago by ▴ 30
0
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0
replies
541
views
How to Write same Gene name in column with strain identifier!
awk NJ perl Phylogeny
updated 3.8 years ago by 4.1k • written 3.8 years ago by ▴ 30
6
votes
5
replies
1.4k
views
How to create matrix from row data
sed perl R awk
updated 3.8 years ago by 21k • written 3.8 years ago by ▴ 30
0
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1
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1.4k
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Comment: Comment: how to create matrix from row data.
3.8 years ago by Info.shi ▴ 30
5
votes
5
replies
3.1k
views
How to remove all-N sequence entries from fasta file.
awk perl
updated 3.8 years ago by 21k • written 3.8 years ago by ▴ 30
2
votes
1
reply
2.8k
views
How to make consensus sequence from aligned reads ?
sequence Transcriptome aligned consensus reads
3.9 years ago by Info.shi ▴ 30
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