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How to annotate your vcf files with the GT (genotype) field
samtools mpileup vcf genotype sequencing
updated 2.9 years ago by • 0 • written 8.6 years ago by ▴ 990
6
votes
5
replies
3.9k
views
How Do You Align Or Compare Two Networks Content-Wise?
network graphs comparison
updated 3.7 years ago by 20 • written 14.0 years ago by ▴ 990
9
votes
4
replies
11k
views
samtools mpileup - how to extract the alternative allele counts for *each* alternative base
samtools mpileup alt mutation
updated 4.7 years ago by ▴ 10 • written 8.7 years ago by ▴ 990
0
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1
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2.1k
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Comment: C: bcftools call transforms the mpileup -3aag variant into a TAAGAAGA>TAAGA variant
updated 5.0 years ago by 44k • written 9.1 years ago by ▴ 990
1
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1
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6.6k
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Comment: C: Mpileup BCF/VCF output without non-ref base 'X'?
updated 5.0 years ago by 44k • written 9.1 years ago by ▴ 990
2
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0
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6.6k
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Answer: A: Mpileup BCF/VCF output without non-ref base 'X'?
updated 5.0 years ago by 44k • written 9.1 years ago by ▴ 990
0
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1
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6.6k
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Comment: C: Mpileup BCF/VCF output without non-ref base 'X'?
updated 5.0 years ago by 44k • written 9.1 years ago by ▴ 990
0
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0
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6.6k
views
Comment: C: Mpileup BCF/VCF output without non-ref base 'X'?
updated 5.0 years ago by 44k • written 9.1 years ago by ▴ 990
0
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0
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6.6k
views
Comment: C: Mpileup BCF/VCF output without non-ref base 'X'?
updated 5.0 years ago by 44k • written 9.1 years ago by ▴ 990
0
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0
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26k
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Comment: C: Converting TCGA expression data from FPKM to TPM
updated 5.0 years ago by 44k • written 8.8 years ago by ▴ 990
0
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0
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14k
views
Comment: C: How To Convert Uniprot Ids To Ensemble Gene/Transcript Ids
updated 5.1 years ago by 44k • written 10.0 years ago by ▴ 990
0
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0
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9.0k
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Comment: C: Bioinformatics Posters Collection
updated 5.1 years ago by 44k • written 13.2 years ago by ▴ 990
1
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0
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5.8k
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Comment: C: Check Ancestry Relation Between Go Terms
updated 5.2 years ago by 44k • written 13.6 years ago by ▴ 990
3
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0
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15k
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Answer: A: Heatmap Visualisations?
updated 5.2 years ago by 44k • written 13.6 years ago by ▴ 990
2
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1
reply
22k
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Answer: A: Bioinformatics "Cheat Sheet"
updated 5.2 years ago by 44k • written 13.7 years ago by ▴ 990
1
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0
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6.2k
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Answer: A: Web Resources To Find Cancer Indication Where A Given Gene Is Amplified
updated 5.8 years ago by 44k • written 14.0 years ago by ▴ 990
0
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0
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14k
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Comment: C: Extracting Reads Containing A Specific Variant From A Bam File
6.4 years ago by Michi ▴ 990
1
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1
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14k
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Answer: A: Iterating through paired-end reads in samtools / pysam
6.4 years ago by Michi ▴ 990
0
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0
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5.5k
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Comment: C: Sorting bed files with bash sort
updated 6.6 years ago by 44k • written 6.6 years ago by ▴ 990
0
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1
reply
3.8k
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Comment: C: General questions about running GSEAPreranked
6.7 years ago by Michi ▴ 990
0
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0
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10.0k
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Answer: A: How to find out the insert size in RNA seq data
6.7 years ago by Michi ▴ 990
0
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0
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2.0k
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Comment: C: Custom genome and tophat
7.9 years ago by Michi ▴ 990
0
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1
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2.0k
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Comment: C: Custom genome and tophat
7.9 years ago by Michi ▴ 990
1
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4
replies
2.0k
views
Custom genome and tophat
sequencing RNA-Seq tophat
7.9 years ago by Michi ▴ 990
0
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0
replies
1.1k
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Single Gene-Fusion detection - resource effective approaches?
RNA-Seq gene-fusion alignment sequencing
7.9 years ago by Michi ▴ 990
1
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0
replies
9.3k
views
Answer: A: R -- Get Exonic Ranges Of A Gene'S Transcripts Given Its Name?
8.2 years ago by Michi ▴ 990
0
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1
reply
5.3k
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Comment: C: How to annotate your vcf files with the GT (genotype) field
8.6 years ago by Michi ▴ 990
0
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1
reply
5.3k
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Comment: C: How to annotate your vcf files with the GT (genotype) field
8.6 years ago by Michi ▴ 990
0
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1
reply
52k
views
Comment: C: Tools to view fastq file
8.6 years ago by Michi ▴ 990
0
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1
reply
64k
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Comment: C: How To Sort Bed Format File
8.6 years ago by Michi ▴ 990
0
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0
replies
2.8k
views
Comment: C: Download link to ensembl human GRCH37 transcript support level (TSL) flags infor
8.7 years ago by Michi ▴ 990
0
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0
replies
11k
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Comment: C: samtools mpileup - how to extract the alternative allele counts for *each* alter
8.7 years ago by Michi ▴ 990
0
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1
reply
11k
views
Comment: C: samtools mpileup - how to extract the alternative allele counts for *each* alter
8.7 years ago by Michi ▴ 990
7
votes
15
replies
6.6k
views
Mpileup BCF/VCF output without non-ref base 'X'?
vcf mpileup sequencing bcf samtools
updated 2.2 years ago by 44k • written 9.1 years ago by ▴ 990
3
votes
3
replies
2.1k
views
bcftools call transforms the mpileup -3aag variant into a TAAGAAGA>TAAGA variant
mpileup sequencing samtools indel bcftools
updated 2.2 years ago by 44k • written 9.1 years ago by ▴ 990
0
votes
1
reply
6.6k
views
Comment: C: Mpileup BCF/VCF output without non-ref base 'X'?
9.1 years ago by Michi ▴ 990
0
votes
1
reply
6.6k
views
Comment: C: Mpileup BCF/VCF output without non-ref base 'X'?
9.1 years ago by Michi ▴ 990
0
votes
1
reply
6.6k
views
Comment: C: Mpileup BCF/VCF output without non-ref base 'X'?
9.1 years ago by Michi ▴ 990
0
votes
0
replies
2.3k
views
Comment: Comment: Samtools Mpileup With Refrence Addition
updated 2.2 years ago by 44k • written 9.1 years ago by ▴ 990
4
votes
3
replies
3.8k
views
Alignment plot of a small extract (sequence) from a .bam file
bam SNP sequencing plot alignment
updated 2.2 years ago by 44k • written 9.2 years ago by ▴ 990
0
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0
replies
45k
views
Comment: C: How To Create Mutation Diagram In R Or In Any Tools?
9.2 years ago by Michi ▴ 990
6
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1
reply
45k
views
Answer: Answer: How To Create Mutation Diagram In R Or In Any Tools?
updated 2.7 years ago by 44k • written 10.0 years ago by ▴ 990
0
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0
replies
1.5k
views
Answer: A: Advanced options Oncodrive
10.0 years ago by Michi ▴ 990
1
vote
0
replies
17k
views
Comment: Comment: Clustering Go Terms?
updated 2.7 years ago by 44k • written 10.0 years ago by ▴ 990
0
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1
reply
3.0k
views
Comment: C: PFAM domains for all protein Isoforms from same protein
10.0 years ago by Michi ▴ 990
1
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3
replies
3.0k
views
PFAM domains for all protein Isoforms from same protein
Isoforms uniprot protein-domain pfam
updated 2.7 years ago by 44k • written 10.0 years ago by ▴ 990
0
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0
replies
4.0k
views
Comment: Comment: Finding Gff File For All Uniprot Protein Isoform Domain Annotations
updated 2.7 years ago by 44k • written 10.0 years ago by ▴ 990
1
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0
replies
2.4k
views
Comment: Comment: Old releases of NCBI Gene (annotation)
updated 3.6 years ago by 44k • written 10.1 years ago by ▴ 990
5
votes
2
replies
2.4k
views
Old releases of NCBI Gene (annotation)
Gene mapping
updated 3.6 years ago by 44k • written 10.1 years ago by ▴ 990
7
votes
0
replies
4.8k
views
Tutorial: How To Perform A Hierarchical Clustering Using Interactive Heatmaps From Gitools?
clustering
updated 20 months ago by 44k • written 10.7 years ago by ▴ 990
91 results • Page 1 of 2
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