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9
votes
6
replies
13k
views
samtools tview symbols
samtools
updated 9.3 years ago by 12k • written 9.3 years ago by ★ 1.4k
8
votes
7
replies
4.0k
views
Question about bowtie
bowtie
updated 22 months ago by 147k • written 10.3 years ago by ★ 1.4k
24
votes
16
replies
38k
views
11 follow
Any tools converting Genbank format to GFF3 format?
genbank gff
updated 2.3 years ago by ★ 3.6k • written 9.7 years ago by ★ 1.4k
4
votes
8
replies
8.3k
views
Blast Against Sra Dataset
blast
updated 2.4 years ago by 44k • written 11.0 years ago by ★ 1.4k
2
votes
4
replies
3.3k
views
problem with bedtools complement: how to extract strand information?
bedtools
updated 2.8 years ago by 44k • written 10.1 years ago by ★ 1.4k
3
votes
4
replies
5.1k
views
Plant orthologous gene database
Orthologous-database
updated 2.9 years ago by 44k • written 10.2 years ago by ★ 1.4k
60
votes
15
replies
82k
views
9 follow
BAM/SAM to FASTA conversion
sam bam
updated 2.6 years ago by 44k • written 9.8 years ago by ★ 1.4k
0
votes
1
reply
3.8k
views
Comment: A: Find mismatch and INDEL position
updated 4.9 years ago by 44k • written 10.4 years ago by ★ 1.4k
0
votes
1
reply
2.7k
views
Comment: C: perl script: extracting mir-target information based on a list
updated 4.9 years ago by 44k • written 10.5 years ago by ★ 1.4k
0
votes
0
replies
2.7k
views
Comment: C: perl script: extracting mir-target information based on a list
updated 4.9 years ago by 44k • written 10.5 years ago by ★ 1.4k
0
votes
1
reply
7.1k
views
Comment: C: Usage of Perl Needleman/Wunsch Module
updated 4.9 years ago by 44k • written 10.4 years ago by ★ 1.4k
1
vote
2
replies
2.2k
views
How to highlight regions in RNA second structure
RNA second structure
updated 4.9 years ago by ▴ 10 • written 6.8 years ago by ★ 1.4k
0
votes
0
replies
4.9k
views
Comment: C: IGV view of bam file
updated 5.0 years ago by 44k • written 9.0 years ago by ★ 1.4k
0
votes
1
reply
4.9k
views
Comment: C: IGV view of bam
updated 5.0 years ago by 44k • written 9.0 years ago by ★ 1.4k
0
votes
1
reply
4.9k
views
Comment: C: IGV view of bam
updated 5.0 years ago by 44k • written 9.0 years ago by ★ 1.4k
0
votes
1
reply
4.9k
views
Comment: C: IGV view of bam
updated 5.0 years ago by 44k • written 9.0 years ago by ★ 1.4k
0
votes
1
reply
2.8k
views
Comment: C: Fasta sequence extraction
updated 5.0 years ago by 44k • written 9.0 years ago by ★ 1.4k
3
votes
1
reply
2.8k
views
Comment: C: Fasta sequence extraction
updated 5.0 years ago by 44k • written 9.0 years ago by ★ 1.4k
0
votes
0
replies
7.4k
views
Comment: C: Where to find BLAST+ default parameters?
updated 5.0 years ago by 44k • written 9.0 years ago by ★ 1.4k
1
vote
2
replies
15k
views
Comment: C: Script To Calculate Dinucleotide Frequency For Many Sequences
updated 5.0 years ago by 44k • written 9.1 years ago by ★ 1.4k
0
votes
1
reply
5.2k
views
Comment: C: Why some lines of BAM file do not contain NH tag
updated 5.0 years ago by 44k • written 9.1 years ago by ★ 1.4k
0
votes
1
reply
5.2k
views
Comment: C: Why some lines of BAM file do not contain NH tag
updated 5.0 years ago by 44k • written 9.1 years ago by ★ 1.4k
0
votes
0
replies
5.2k
views
Comment: C: Why some lines of BAM file do not contain NH tag
updated 5.0 years ago by 44k • written 9.1 years ago by ★ 1.4k
0
votes
1
reply
5.2k
views
Comment: Comment: Why some lines of BAM file do not contain NH tag
updated 2.3 years ago by 44k • written 9.1 years ago by ★ 1.4k
0
votes
0
replies
2.8k
views
Comment: Comment: How to decrease computing time of reciprocal BLAST
updated 2.1 years ago by 44k • written 9.3 years ago by ★ 1.4k
0
votes
1
reply
3.1k
views
Comment: C: RNA-seq triple replicates
updated 5.0 years ago by 44k • written 9.4 years ago by ★ 1.4k
168
votes
52
replies
135k
views
28 follow
Fastq Convert To Fasta
perl
11.0 years ago by biolab ★ 1.4k
0
votes
0
replies
7.8k
views
Comment: A: How to get gene coding sequences based on GFF file?
updated 5.1 years ago by 44k • written 9.4 years ago by ★ 1.4k
1
vote
5
replies
2.7k
views
Interesting Question about RNAhybrid
RNAfold RNAhybrid
updated 3.0 years ago by 44k • written 10.4 years ago by ★ 1.4k
12
votes
7
replies
9.0k
views
6 follow
How To Combine Several Perl Scripts Into One?
perl
updated 5.1 years ago by • 0 • written 10.8 years ago by ★ 1.4k
7
votes
11
replies
9.5k
views
8 follow
fastx toolkit problem: fastq to fasta
fastx
updated 2.8 years ago by 44k • written 10.0 years ago by ★ 1.4k
0
votes
2
replies
3.6k
views
How to convert genomic position to transcript position?
gff
updated 6.0 years ago by 20 • written 8.7 years ago by ★ 1.4k
6
votes
5
replies
14k
views
NCBI protein IDs convert to gene IDs and then gene sequences
ncbi id
updated 2.9 years ago by 44k • written 10.2 years ago by ★ 1.4k
2
votes
6
replies
4.7k
views
tophat failed: Warning: junction database is empty!
tophat mapping
updated 2.5 years ago by 44k • written 9.7 years ago by ★ 1.4k
36
votes
13
replies
25k
views
8 follow
Get intronic and intergenic sequences based on gff file
GFF
updated 2.9 years ago by 44k • written 10.2 years ago by ★ 1.4k
5
votes
11
replies
7.1k
views
Usage of Perl Needleman/Wunsch Module
alignment global needleman-wunsh PERL module
updated 2.8 years ago by 44k • written 10.4 years ago by ★ 1.4k
2
votes
3
replies
8.6k
views
bowtie problem: cannot locate bowtie index
bowtie
updated 2.7 years ago by 44k • written 9.9 years ago by ★ 1.4k
3
votes
5
replies
2.8k
views
How to decrease computing time of reciprocal BLAST
blast Reciprocal-Best-Hits orthologous
updated 2.1 years ago by 44k • written 9.3 years ago by ★ 1.4k
1
vote
1
reply
5.5k
views
Answer: A: Command or Perl script for changing headers of multiple FASTA files in a specifi
7.2 years ago by biolab ★ 1.4k
0
votes
0
replies
1.9k
views
bowtie XA tag
bowtie
7.3 years ago by biolab ★ 1.4k
0
votes
0
replies
4.4k
views
Comment: C: How to download raw data in batch from NCBI based on Series Accession number or
7.4 years ago by biolab ★ 1.4k
2
votes
9
replies
4.4k
views
How to download raw data in batch from NCBI based on Series Accession number or Platform ID
sra
updated 7.4 years ago by 101k • written 7.5 years ago by ★ 1.4k
0
votes
0
replies
3.7k
views
Comment: C: HISAT2: does the parameter -k 1 means unique mapping?
7.4 years ago by biolab ★ 1.4k
0
votes
0
replies
3.7k
views
Comment: C: HISAT2: does the parameter -k 1 means unique mapping?
7.4 years ago by biolab ★ 1.4k
4
votes
5
replies
3.7k
views
HISAT2: does the parameter -k 1 means unique mapping?
hisat2
updated 7.4 years ago by 47k • written 7.4 years ago by ★ 1.4k
0
votes
0
replies
3.8k
views
Comment: C: Is it necessary to include --known-splicesite-infile in HISAT2?
7.4 years ago by biolab ★ 1.4k
2
votes
2
replies
3.8k
views
Is it necessary to include --known-splicesite-infile in HISAT2?
hisat2
updated 7.4 years ago by 147k • written 7.4 years ago by ★ 1.4k
0
votes
0
replies
2.4k
views
Comment: C: Is it OK to use --split-files option in fastq-dump when processing SE data?
7.5 years ago by biolab ★ 1.4k
0
votes
1
reply
2.4k
views
Comment: C: Is it OK to use --split-files option in fastq-dump when processing SE data?
7.5 years ago by biolab ★ 1.4k
1
vote
1
reply
2.4k
views
Comment: C: Is it OK to use --split-files option in fastq-dump when processing SE data?
7.5 years ago by biolab ★ 1.4k
426 results • Page 1 of 9
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