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608
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Comment: Comment: Is it possible to convert 3 prime sequencing read counts into TPMs?
13 months ago by Mat ▴ 80
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2
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608
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Is it possible to convert 3 prime sequencing read counts into TPMs?
RNAseq TPM expression
13 months ago by Mat ▴ 80
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1
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5.1k
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Comment: Comment: Salmon alignment based quantification
14 months ago by Mat ▴ 80
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1
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740
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High amount of intronic/intergenic reads in SMARTer stranded total bulk RNAseq
RNA-seq DNA SMARTer
updated 14 months ago by 44k • written 14 months ago by ▴ 80
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1.7k
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Comment: Comment: General approach for unsupervised clustering of bulk RNAseq samples and deriving
21 months ago by Mat ▴ 80
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3
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1.7k
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General approach for unsupervised clustering of bulk RNAseq samples and deriving/applying gene signature
clustering RNAseq DESeq2
21 months ago by Mat ▴ 80
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0
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1.7k
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Comment: Comment: General approach for unsupervised clustering of bulk RNAseq samples and deriving
21 months ago by Mat ▴ 80
0
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1
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560
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Methods to identify genes/pathways that cause upregulation of specific gene of interest
Pathway RNAseq
updated 2.7 years ago by ▴ 20 • written 2.7 years ago by ▴ 80
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1
reply
1.6k
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How to remove nextera with fastp
rnaseq nextera fastp ngs
updated 3.0 years ago by 101k • written 3.0 years ago by ▴ 80
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2
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2.1k
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Batch effects from sequencing samples accross multiple flow cells.
rna-seq batch batch-effect sequencing
updated 7 months ago by 44k • written 3.5 years ago by ▴ 80
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1
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1.7k
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Comment: C: Duplication rate differs up to 30% from that of Fastqc for single end reads
4.1 years ago by Mat ▴ 80
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3
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1.7k
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Duplication rate differs up to 30% from that of Fastqc for single end reads
RNA-Seq fastqc fastp
4.1 years ago by Mat ▴ 80
1
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0
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5.5k
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Answer: A: Downloading synonyms for dbSNP rsids
updated 5.0 years ago by 44k • written 9.0 years ago by ▴ 80
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0
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5.1k
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Comment: C: Keep Format and Individual fields when annotating VCF with VEP
5.6 years ago by Mat ▴ 80
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0
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1.4k
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Variant training set for Zebrafish to apply GATK VariantRecalibrator
SNP Zebrafish GATK Genotyping-by-sequencing NGS
6.3 years ago by Mat ▴ 80
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1
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3.2k
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Answer: A: How to get the beginning and end-positions of a QTL-interval after doing QTL-ana
7.1 years ago by Mat ▴ 80
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0
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1.6k
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Is allele switching necessary before QTL mapping can be performed?
QTL mapping
7.3 years ago by Mat ▴ 80
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0
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2.5k
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Comment: C: QTL mapping vs. Association mapping for bi-parental crosses
7.5 years ago by Mat ▴ 80
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2
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2.5k
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QTL mapping vs. Association mapping for bi-parental crosses
qtl mapping
7.5 years ago by Mat ▴ 80
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1
reply
13k
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Comment: C: Flip Gwas Data To Positive Strand (Hg19 Build 37)
9.3 years ago by Mat ▴ 80
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2
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13k
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Comment: C: Flip Gwas Data To Positive Strand (Hg19 Build 37)
9.3 years ago by Mat ▴ 80
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0
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2.0k
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Where To Find Pre-Computed Gene-To-Gene-Similarities Based On Gene Ontology (Go)
go gene ontology similarity
10.8 years ago by Mat ▴ 80
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2
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4.0k
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Access Abstract From Pubmed Using Bio::Db::Eutilities
perl bioperl xml pubmed eutils
updated 3.0 years ago by 44k • written 11.1 years ago by ▴ 80
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