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Comment: C: Extracting reads mapping to CDS regions but not the first 45bp after ATG
5.3 years ago by Adrian Pelin ★ 2.6k
0
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1
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1.9k
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Comment: C: Extracting reads mapping to CDS regions but not the first 45bp after ATG
5.3 years ago by Adrian Pelin ★ 2.6k
4
votes
7
replies
1.9k
views
Extracting reads mapping to CDS regions but not the first 45bp after ATG
RNA-Seq bed bam
updated 5.3 years ago by 164k • written 5.3 years ago by ★ 2.6k
0
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0
replies
820
views
Mapping short 26-32nt RPF reads to human genome
RNA-Seq Ribosomal profiling Mapping RPF
5.3 years ago by Adrian Pelin ★ 2.6k
0
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1
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2.3k
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Comment: C: From per bp coverage to average coverage in 10bp intervals
5.3 years ago by Adrian Pelin ★ 2.6k
0
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1
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2.3k
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Comment: C: From per bp coverage to average coverage in 10bp intervals
5.3 years ago by Adrian Pelin ★ 2.6k
0
votes
1
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2.3k
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Comment: C: From per bp coverage to average coverage in 10bp intervals
5.3 years ago by Adrian Pelin ★ 2.6k
0
votes
1
reply
2.3k
views
Comment: C: From per bp coverage to average coverage in 10bp intervals
5.3 years ago by Adrian Pelin ★ 2.6k
0
votes
0
replies
2.3k
views
Comment: C: From per bp coverage to average coverage in 10bp intervals
5.3 years ago by Adrian Pelin ★ 2.6k
3
votes
9
replies
2.3k
views
From per bp coverage to average coverage in 10bp intervals
genome DNA-seq bam
updated 5.3 years ago by 36k • written 5.3 years ago by ★ 2.6k
0
votes
1
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1.9k
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Comment: C: HISAT2/stringtie: intron impact on expression
5.3 years ago by Adrian Pelin ★ 2.6k
0
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1
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1.9k
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Comment: C: HISAT2/stringtie: intron impact on expression
5.3 years ago by Adrian Pelin ★ 2.6k
0
votes
5
replies
1.9k
views
HISAT2/stringtie: intron impact on expression
HISAT2 stringtie TPM RNA-seq mRNA Expression
updated 5.4 years ago by ★ 4.1k • written 5.4 years ago by ★ 2.6k
0
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0
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889
views
Comment: C: Generating Interaction map
5.5 years ago by Adrian Pelin ★ 2.6k
3
votes
2
replies
889
views
Generating Interaction map
cytoscape interactome R
updated 5.5 years ago by 27k • written 5.5 years ago by ★ 2.6k
4
votes
5
replies
4.3k
views
Perl Script To Retrieve All Orf?
orf perl
updated 5.6 years ago by ▴ 20 • written 10.7 years ago by ★ 2.6k
0
votes
1
reply
12k
views
Comment: C: HISAT2 output direct to bam
updated 5.6 years ago by 85k • written 5.6 years ago by ★ 2.6k
12
votes
6
replies
12k
views
HISAT2 output direct to bam
RNA-Seq samtools
updated 3.3 years ago by 85k • written 5.6 years ago by ★ 2.6k
0
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0
replies
15k
views
Comment: C: hisat2 command line fastq to bam
5.6 years ago by Adrian Pelin ★ 2.6k
0
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0
replies
1.8k
views
Comment: C: Extracting sequence and annotation of a particular gene
5.7 years ago by Adrian Pelin ★ 2.6k
1
vote
2
replies
1.8k
views
Extracting sequence and annotation of a particular gene
Annotation GTF
updated 5.7 years ago by 85k • written 5.7 years ago by ★ 2.6k
0
votes
0
replies
1.9k
views
Comment: C: Virus RNA Seq reads mapping with salmon
5.7 years ago by Adrian Pelin ★ 2.6k
1
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1
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1.9k
views
Answer: A: Virus RNA Seq reads mapping with salmon
5.7 years ago by Adrian Pelin ★ 2.6k
0
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0
replies
6.8k
views
Comment: C: How to get percent identity from bam file ?
5.8 years ago by Adrian Pelin ★ 2.6k
1
vote
0
replies
39k
views
Comment: C: BLAST, setting maximum number of hits
updated 5.8 years ago by 44k • written 9.8 years ago by ★ 2.6k
2
votes
2
replies
1.2k
views
Comparing NCI-60 transcriptome with another variable to determine genes that correlate
RNA-Seq NCI60
updated 5.9 years ago by ▴ 350 • written 5.9 years ago by ★ 2.6k
1
vote
0
replies
2.5k
views
Comment: C: bash & quickGO to download gene symbols of a GO term
6.0 years ago by Adrian Pelin ★ 2.6k
2
votes
4
replies
2.5k
views
bash & quickGO to download gene symbols of a GO term
Annotations GO bash
updated 6.0 years ago by 7.6k • written 6.0 years ago by ★ 2.6k
0
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0
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2.5k
views
Comment: C: bash & quickGO to download gene symbols of a GO term
6.0 years ago by Adrian Pelin ★ 2.6k
6
votes
7
replies
2.4k
views
RNA-seq analysis of virally infected cells
RNA-Seq virus host
updated 6.0 years ago by 20 • written 6.3 years ago by ★ 2.6k
6
votes
7
replies
4.9k
views
How To Check For Ploidy Using Ngs Only?
ngs mapping
updated 6.2 years ago by ▴ 230 • written 10.8 years ago by ★ 2.6k
2
votes
8
replies
4.2k
views
Demultiplexing SRA data
SRA NGS Illumina multiplex
updated 6.2 years ago by 44k • written 8.8 years ago by ★ 2.6k
0
votes
1
reply
4.2k
views
Comment: C: Demultiplexing SRA data
updated 6.2 years ago by 44k • written 8.8 years ago by ★ 2.6k
1
vote
0
replies
41k
views
Comment: C: Converting Bam To Fastq
updated 6.2 years ago by 44k • written 9.9 years ago by ★ 2.6k
0
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1
reply
2.4k
views
Comment: C: RNA-seq analysis of virally infected cells
6.3 years ago by Adrian Pelin ★ 2.6k
0
votes
1
reply
2.4k
views
Comment: C: RNA-seq analysis of virally infected cells
6.3 years ago by Adrian Pelin ★ 2.6k
1
vote
0
replies
2.4k
views
Comment: C: RNA-seq analysis of virally infected cells
6.3 years ago by Adrian Pelin ★ 2.6k
1
vote
1
reply
4.0k
views
Answer: A: FPKM matrix after stringtie using ballgown
6.3 years ago by Adrian Pelin ★ 2.6k
12
votes
8
replies
7.3k
views
Annotating/Finding "NNNNNN" scaffold gaps in genome assembly
bed NGS scaffolding Assembly
updated 2.1 years ago by 44k • written 9.3 years ago by ★ 2.6k
4
votes
8
replies
3.3k
views
How To Phase Haplotypes In A Highly Polymorphic Genome
vcf variant-calling
updated 6.8 years ago by 20 • written 10.8 years ago by ★ 2.6k
0
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0
replies
4.7k
views
Comment: C: Anybody Managed To Make Inparanoid Work?
7.0 years ago by Adrian Pelin ★ 2.6k
0
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0
replies
2.2k
views
Comment: C: Detecting junctions from reads spanning large indels
7.1 years ago by Adrian Pelin ★ 2.6k
0
votes
1
reply
2.2k
views
Comment: C: Detecting junctions from reads spanning large indels
7.1 years ago by Adrian Pelin ★ 2.6k
3
votes
5
replies
2.2k
views
Detecting junctions from reads spanning large indels
DNA-seq sam
updated 7.1 years ago by 164k • written 7.1 years ago by ★ 2.6k
0
votes
1
reply
2.1k
views
Comment: C: Filter sam file to remove reads with large deletions
7.1 years ago by Adrian Pelin ★ 2.6k
0
votes
1
reply
4.5k
views
Comment: C: bedtools merge - removing features completly overlapped by other features
7.2 years ago by Adrian Pelin ★ 2.6k
0
votes
1
reply
4.5k
views
Comment: C: bedtools merge - removing features completly overlapped by other features
7.2 years ago by Adrian Pelin ★ 2.6k
0
votes
1
reply
4.5k
views
Comment: C: bedtools merge - removing features completly overlapped by other features
7.2 years ago by Adrian Pelin ★ 2.6k
0
votes
2
replies
4.5k
views
Comment: C: Phylogeny: tree branch length on a log scale
7.3 years ago by Adrian Pelin ★ 2.6k
1
vote
4
replies
4.5k
views
Phylogeny: tree branch length on a log scale
FigTree phylogeny
7.3 years ago by Adrian Pelin ★ 2.6k
509 results • Page 2 of 11
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