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0
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2.1k
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Comment: C: How to add a gene in Geneious
10.3 years ago by Adrian Pelin ★ 2.6k
0
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1
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3.0k
views
Comment: C: GTF files for cufflinks
10.3 years ago by Adrian Pelin ★ 2.6k
2
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5
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3.0k
views
GTF files for cufflinks
cufflinks gtf annotation jgi
updated 3.0 years ago by 44k • written 10.3 years ago by ★ 2.6k
1
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1
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3.2k
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Comment: C: How to estimate the metagenome size
10.3 years ago by Adrian Pelin ★ 2.6k
1
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1
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3.2k
views
Answer: C: estimate Genome size
10.3 years ago by Adrian Pelin ★ 2.6k
0
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0
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18k
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Comment: C: Finding Adapters For Illumina Reads
10.3 years ago by Adrian Pelin ★ 2.6k
1
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0
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2.5k
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Comment: C: Convert FPKM value to FPK value
10.3 years ago by Adrian Pelin ★ 2.6k
0
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0
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2.2k
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KOG Enrichment for high Fst values
Fst KOG enrichment population
updated 10.3 years ago by 20 • written 10.5 years ago by ★ 2.6k
1
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0
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9.5k
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Comment: C: Allele frequency of vcf file
10.4 years ago by Adrian Pelin ★ 2.6k
0
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1
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9.5k
views
Comment: C: Allele frequency of vcf file
10.4 years ago by Adrian Pelin ★ 2.6k
0
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0
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2.0k
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VCFTools: Calculation of r^2 fails
vcf vcftools r2
updated 20 months ago by 44k • written 10.4 years ago by ★ 2.6k
0
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1
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7.3k
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Comment: Comment: Error in SNP calling, samtools
updated 3.1 years ago by 44k • written 10.4 years ago by ★ 2.6k
0
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0
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4.6k
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Comment: C: Plotting LD decay in window
10.4 years ago by Adrian Pelin ★ 2.6k
1
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2
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4.6k
views
Plotting LD decay in window
r2 R plot LD
updated 3.1 years ago by 44k • written 10.4 years ago by ★ 2.6k
0
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2
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1.9k
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LD r^2 in clonal tetraploids
r^2 popgen
10.4 years ago by Adrian Pelin ★ 2.6k
19
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0
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39k
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Answer: Answer: Still confused about exons versus CDS
updated 3.1 years ago by 44k • written 10.4 years ago by ★ 2.6k
2
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4
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4.3k
views
Calculate r^2 from allele frequencies
r2 vcf
updated 2.9 years ago by 44k • written 10.4 years ago by ★ 2.6k
0
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0
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4.3k
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Comment: Comment: Calculate r^2 from allele frequencies
updated 2.9 years ago by 44k • written 10.4 years ago by ★ 2.6k
0
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0
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1.5k
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Determining abnormalities in synteny blocks
DNA-seq
10.4 years ago by Adrian Pelin ★ 2.6k
4
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1
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3.7k
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Answer: Answer: Demultiplexing fastq files. Undocumented Illumina feature.
updated 3.1 years ago by 44k • written 10.5 years ago by ★ 2.6k
0
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3
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2.1k
views
Test for recombination in a clonal tetraploid?
NGS snp HiSeq
updated 3.1 years ago by 44k • written 10.5 years ago by ★ 2.6k
1
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1
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5.3k
views
Answer: A: Genome Rearrangement Detection (From Short Reads Alignment Or Genome Alignment)
10.5 years ago by Adrian Pelin ★ 2.6k
0
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2
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2.6k
views
Linkage Disequlibirum (R^2) = recombination?
ngs vcf r2
updated 3.1 years ago by 44k • written 10.5 years ago by ★ 2.6k
1
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1
reply
8.5k
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Comment: C: bedtools: extracting no coverage regions
10.5 years ago by Adrian Pelin ★ 2.6k
1
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1
reply
1.7k
views
Building a reference genome for pop differentiation.
DNA-seq NGS pop gen
updated 10.5 years ago by 12k • written 10.5 years ago by ★ 2.6k
0
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0
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4.2k
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Comment: C: FST: allele-counts or allele-frequencies?
10.5 years ago by Adrian Pelin ★ 2.6k
0
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2
replies
4.2k
views
FST: allele-counts or allele-frequencies?
NGS FST popgen
updated 3.1 years ago by 44k • written 10.5 years ago by ★ 2.6k
3
votes
0
replies
7.8k
views
Answer: A: Best way to remove contaminants to get nuclear genome
10.5 years ago by Adrian Pelin ★ 2.6k
1
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0
replies
9.9k
views
Comment: C: Should I use MiSeq or HiSeq to generate data for assembling the blowfly genome?
10.5 years ago by Adrian Pelin ★ 2.6k
1
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1
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9.9k
views
Answer: A: MiSeq or HiSeq?
10.5 years ago by Adrian Pelin ★ 2.6k
2
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0
replies
5.2k
views
Answer: A: software for constructing contigs and scaffold
10.5 years ago by Adrian Pelin ★ 2.6k
0
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1
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3.7k
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Comment: A: Detecting Variants near repeats
10.5 years ago by Adrian Pelin ★ 2.6k
2
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0
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5.4k
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Comment: C: Command blast excluding species
10.5 years ago by Adrian Pelin ★ 2.6k
0
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4
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4.7k
views
Merging Bayesian probability values with bootstraps from ML
ML PHYML Bayesian Support
updated 10.5 years ago by 4.9k • written 10.5 years ago by ★ 2.6k
9
votes
8
replies
8.5k
views
bedtools: extracting no coverage regions
bedtools bam coverage
updated 3.2 years ago by 44k • written 10.6 years ago by ★ 2.6k
1
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0
replies
5.6k
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Comment: C: If you have a chance to ask questions to the CEO of Illumina, what would you do?
10.6 years ago by Adrian Pelin ★ 2.6k
1
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1
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4.4k
views
Answer: A: VCFTools weir-fst-pop on haploid organisms
10.6 years ago by Adrian Pelin ★ 2.6k
0
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1
reply
6.7k
views
Comment: C: Phylogenetic analysis, combining Bayesian and Maximum Likelihood
10.6 years ago by Adrian Pelin ★ 2.6k
0
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0
replies
2.6k
views
MrBayes, how to judge the quality of a run?
Tracer MrBayes Bayesian
updated 3.2 years ago by 44k • written 10.6 years ago by ★ 2.6k
0
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1
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6.7k
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Comment: C: Phylogenetic analysis, combining Bayesian and Maximum Likelihood
10.6 years ago by Adrian Pelin ★ 2.6k
1
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8
replies
6.7k
views
Phylogenetic analysis, combining Bayesian and Maximum Likelihood
mrbayes phylogeny bayesian ML
updated 3.2 years ago by 44k • written 10.6 years ago by ★ 2.6k
0
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0
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4.4k
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Comment: C: Best Cnv Software?
10.6 years ago by Adrian Pelin ★ 2.6k
0
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0
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4.4k
views
Comment: C: Best Cnv Software?
10.6 years ago by Adrian Pelin ★ 2.6k
1
vote
7
replies
4.4k
views
Best Cnv Software?
ngs paired-end cnv
updated 10.6 years ago by 8.3k • written 10.6 years ago by ★ 2.6k
0
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1
reply
4.8k
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Comment: C: How To Find Novel Genes From Comparative Transcriptomics?
10.6 years ago by Adrian Pelin ★ 2.6k
0
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0
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3.1k
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Comment: C: Bwa Map Single And Pe Reads To Ref?
10.6 years ago by Adrian Pelin ★ 2.6k
2
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4
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3.1k
views
Bwa Map Single And Pe Reads To Ref?
bwa vcf
10.6 years ago by Adrian Pelin ★ 2.6k
1
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1
reply
4.8k
views
Answer: A: How To Find Novel Genes From Comparative Transcriptomics?
10.6 years ago by Adrian Pelin ★ 2.6k
0
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0
replies
4.6k
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Comment: C: Fastqc, Trimming And Kmers
10.6 years ago by Adrian Pelin ★ 2.6k
0
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1
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5.8k
views
Comment: C: Newbler: Merged Miseq Reads + Mate Pairs?
10.6 years ago by Adrian Pelin ★ 2.6k
509 results • Page 8 of 11
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