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3
votes
7
replies
4.3k
views
How to get input for provean from vcf files annotated by snpeff?
snpeff vcf provean
updated 2.7 years ago by 44k • written 10.0 years ago by ▴ 440
0
votes
1
reply
4.8k
views
Comment: C: Why does trinity and cufflink use bowtie to align reads back to assembled reads?
updated 4.9 years ago by 44k • written 10.5 years ago by ▴ 440
8
votes
3
replies
19k
views
Answer: A: Bwa Mem Have Different Alignment Result When Using Different Threads
updated 5.1 years ago by 44k • written 10.8 years ago by ▴ 440
47
votes
32
replies
19k
views
17 follow
Bwa Mem Have Different Alignment Result When Using Different Threads
updated 3 months ago by • 0 • written 10.9 years ago by ▴ 440
15
votes
4
replies
22k
views
How does sliding window work in Trimmomatic
Trimmomatic illumina
updated 3.2 years ago by 44k • written 10.6 years ago by ▴ 440
0
votes
0
replies
6.6k
views
Comment: C: Augustus install mac
8.0 years ago by shl198 ▴ 440
4
votes
2
replies
2.4k
views
Is checking clustering of technical replicates necessary for RNAseq?
RNA-Seq technical-replicates
updated 2.4 years ago by 44k • written 9.6 years ago by ▴ 440
5
votes
2
replies
2.4k
views
relationship between coverage and expression level in RNAseq
RNA-Seq depth expression experiment design
updated 9.6 years ago by ▴ 480 • written 9.6 years ago by ▴ 440
0
votes
1
reply
4.3k
views
Comment: C: How to get input for provean from vcf files annotated by snpeff?
10.0 years ago by shl198 ▴ 440
0
votes
1
reply
1.9k
views
detect SNPs using DNAseq fastq files which were used to assemble the genome
SNP DNA-seq Assembly
updated 2.9 years ago by 44k • written 10.2 years ago by ▴ 440
0
votes
1
reply
7.8k
views
Comment: Comment: Why is pre formatted refseq database larger than nt database in blastdb?
updated 3.0 years ago by 44k • written 10.3 years ago by ▴ 440
17
votes
4
replies
7.8k
views
Why is pre formatted refseq database larger than nt database in blastdb?
blast refseq nt
updated 3.0 years ago by 44k • written 10.4 years ago by ▴ 440
0
votes
0
replies
3.5k
views
Comment: Comment: Bowtie2 treats reads as not mapping even if the reads have exact same sequences
updated 3.0 years ago by 44k • written 10.4 years ago by ▴ 440
0
votes
1
reply
3.5k
views
Comment: C: Bowtie2 treats reads as not mapping even if the reads have exact same sequences
10.4 years ago by shl198 ▴ 440
5
votes
4
replies
3.5k
views
Bowtie2 treats reads as not mapping even if the reads have exact same sequences with reference?
bowtie2 quality tophat RNA-Seq
updated 3.0 years ago by 44k • written 10.4 years ago by ▴ 440
0
votes
0
replies
9.2k
views
Comment: C: Can bowtie2-build index for gzipped file?
10.4 years ago by shl198 ▴ 440
1
vote
1
reply
9.2k
views
Comment: Comment: Can bowtie2-build index for gzipped file?
updated 3.1 years ago by 44k • written 10.4 years ago by ▴ 440
4
votes
5
replies
9.2k
views
Can bowtie2-build index for gzipped file?
bowtie2 bowtie2-build gzip gunzip
updated 3.1 years ago by 44k • written 10.4 years ago by ▴ 440
1
vote
4
replies
4.2k
views
How To Get Genome Name And Genome Type With Gi Number And Accession Number In Python?
biopython
updated 10.4 years ago by 20 • written 10.8 years ago by ▴ 440
1
vote
3
replies
4.8k
views
Why does trinity and cufflink use bowtie to align reads back to assembled reads?
RNA-Seq trinity cufflink bowtie
10.5 years ago by shl198 ▴ 440
24
votes
2
replies
13k
views
Run Makeblastdb For Compressed File
blast+ makeblastdb
updated 10.6 years ago by 49k • written 10.6 years ago by ▴ 440
3
votes
1
reply
4.4k
views
Align Paired End Reads Using Blast
blast paired-end ngs
updated 10.7 years ago by 101k • written 10.7 years ago by ▴ 440
0
votes
1
reply
19k
views
Comment: C: Bwa Mem Have Different Alignment Result When Using Different Threads
10.8 years ago by shl198 ▴ 440
3
votes
1
reply
4.5k
views
Can Igv View Blast+ Output File?
blast+ igv ngs
updated 10.8 years ago by 101k • written 10.8 years ago by ▴ 440
0
votes
0
replies
19k
views
Comment: C: Bwa Mem Have Different Alignment Result When Using Different Threads
10.9 years ago by shl198 ▴ 440
0
votes
0
replies
19k
views
Comment: C: Bwa Mem Have Different Alignment Result When Using Different Threads
10.9 years ago by shl198 ▴ 440
2
votes
1
reply
19k
views
Comment: C: Bwa Mem Have Different Alignment Result When Using Different Threads
10.9 years ago by shl198 ▴ 440
0
votes
0
replies
6.6k
views
Comment: C: The Reference Genome Of The Reading In Bam File
11.0 years ago by shl198 ▴ 440
0
votes
1
reply
6.6k
views
Comment: C: The Reference Genome Of The Reading In Bam File
11.0 years ago by shl198 ▴ 440
2
votes
4
replies
6.6k
views
The Reference Genome Of The Reading In Bam File
r bam alignment
updated 11.0 years ago by 12k • written 11.0 years ago by ▴ 440
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