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Comment: Comment: Jensen-Shannon Divergence (Capra and Singh, 2007) scored with substitution matri
17 months ago by Jonathan Lefebre ▴ 70
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2
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699
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Jensen-Shannon Divergence (Capra and Singh, 2007) scored with substitution matrix for conservation score
multiple-sequence-alignment conservation
updated 17 months ago by 44k • written 17 months ago by ▴ 70
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899
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Answer: Answer: Need help using Biopython
17 months ago by Jonathan Lefebre ▴ 70
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0
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5.9k
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Comment: Comment: Getting Pairwise Sequence Alignment Score With Biopython
17 months ago by Jonathan Lefebre ▴ 70
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5.9k
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Answer: Answer: Getting Pairwise Sequence Alignment Score With Biopython
17 months ago by Jonathan Lefebre ▴ 70
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0
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429
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Considering gaps in calculating conservation score from MSA
multiple alignment sequence conservation python
18 months ago by Jonathan Lefebre ▴ 70
3
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2
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1.1k
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Filtering AA sequences of PDB structures by sequence identity
identity python sequence
updated 2.4 years ago by ★ 28k • written 2.4 years ago by ▴ 70
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4.3k
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Comment: Comment: Splitting several PDB files into chains and save as separate files
2.7 years ago by Jonathan Lefebre ▴ 70
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4
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4.3k
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Splitting several PDB files into chains and save as separate files
biology python PDB structural biopython
updated 2.7 years ago by ★ 2.1k • written 2.7 years ago by ▴ 70
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1
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1.7k
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Comment: Comment: Iterating over several PDB files in ProDy module
3.0 years ago by Jonathan Lefebre ▴ 70
4
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4
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1.7k
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Iterating over several PDB files in ProDy module
python iteration Prody
updated 3.0 years ago by ★ 2.1k • written 3.0 years ago by ▴ 70
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2
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1.4k
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Filtering MSA by similiarity to a consensus sequence/motif
biopython motif multiple alignment MSA python sequence search
updated 3.3 years ago by 21k • written 3.3 years ago by ▴ 70
3
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1
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849
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Is reclustering of a cluster obtained from hierarchical clustering "allowed"?
analysis cluster hierarchical clustering
updated 3.3 years ago by ★ 2.9k • written 3.3 years ago by ▴ 70
1
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1
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857
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Retrieving Clusters from Clustermatrix, obtained with Hierarchical Clustering
seaborn python Hierarchical clustering
updated 3.3 years ago by ▴ 650 • written 3.3 years ago by ▴ 70
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6
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2.3k
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Measuring pairwise distances between residues/atoms in structural alignment of protein family
biopython protein alignment distance pairwise
updated 3.3 years ago by 21k • written 3.3 years ago by ▴ 70
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1
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2.3k
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Answer: Answer: Measuring pairwise distances between residues/atoms in structural alignment of p
3.3 years ago by Jonathan Lefebre ▴ 70
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0
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2.3k
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Comment: Comment: Measuring pairwise distances between residues/atoms in structural alignment of p
3.3 years ago by Jonathan Lefebre ▴ 70
0
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0
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577
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Measuring pairwise distances between pockets in structural alignment
biopython protein alignment distance pairwise
3.4 years ago by Jonathan Lefebre ▴ 70
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