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4
votes
3
replies
2.3k
views
How to measure pairwise genetic distance in all samples of a VCF file
pop-gen pairwise-distance VCF
updated 8 months ago by ▴ 50 • written 2.3 years ago by ▴ 340
0
votes
1
reply
591
views
Comment: Comment: How to Split FASTQ File by UMI Indices into Multiple Files
8 months ago by LDT ▴ 340
0
votes
4
replies
591
views
How to Split FASTQ File by UMI Indices into Multiple Files
SeqKit UMI split fastq
updated 8 months ago by 149k • written 8 months ago by ▴ 340
0
votes
1
reply
809
views
Comment: Comment: Editing Human Reference Genome by adding a CDS
10 months ago by LDT ▴ 340
2
votes
3
replies
809
views
Editing Human Reference Genome by adding a CDS
gff agat transcriptome
updated 10 months ago by 55k • written 10 months ago by ▴ 340
1
vote
2
replies
1.3k
views
How to Modify Reference Sequence and Annotation Files
reference edit annotation
updated 11 months ago by • 0 • written 2.9 years ago by ▴ 340
11
votes
3
replies
1.1k
views
Whole genome comparison of two closely related plant species
mummer comparative-genomics whole-genome-alignment whole-genome-comparison mauve
updated 22 months ago by ▴ 60 • written 22 months ago by ▴ 340
5
votes
9
replies
5.5k
views
Transform a data.frame to GRranges in R
GenomicRanges R data.frame bed
updated 2.2 years ago by • 0 • written 2.5 years ago by ▴ 340
1
vote
0
replies
2.0k
views
Comment: Comment: Understanding 1/1 output in VCF
2.2 years ago by LDT ▴ 340
6
votes
8
replies
2.0k
views
Understanding 1/1 output in VCF
vcf
2.2 years ago by LDT ▴ 340
0
votes
1
reply
2.0k
views
Comment: Comment: Understanding 1/1 output in VCF
2.2 years ago by LDT ▴ 340
0
votes
1
reply
2.0k
views
Comment: Comment: Understanding 1/1 output in VCF
2.2 years ago by LDT ▴ 340
0
votes
0
replies
1.5k
views
Comment: Comment: How to find newly submitted accessions in NCBI
2.2 years ago by LDT ▴ 340
0
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1
reply
1.5k
views
Comment: Comment: How to find newly submitted accessions in NCBI
2.2 years ago by LDT ▴ 340
0
votes
1
reply
1.5k
views
Comment: Comment: How to find newly submitted accessions in NCBI
2.2 years ago by LDT ▴ 340
5
votes
7
replies
1.5k
views
How to find newly submitted accessions in NCBI
ncbi
updated 22 months ago by ▴ 30 • written 2.2 years ago by ▴ 340
2
votes
1
reply
1.2k
views
Convert a bed file to bigbed
bed bed12 ucsc
updated 2.2 years ago by 5.0k • written 2.2 years ago by ▴ 340
0
votes
1
reply
1.2k
views
Comment: Comment: error: Couldn't open trackDb.txt in hubCheck
2.2 years ago by LDT ▴ 340
7
votes
1
reply
4.9k
views
Remove multiple samples from a VCF file using bcftools
vcf bcftools vcftools
updated 2.2 years ago by 165k • written 2.2 years ago by ▴ 340
3
votes
0
replies
6.4k
views
Answer: Answer: Genome annotation: convert gtf to gff3 file
2.3 years ago by LDT ▴ 340
0
votes
0
replies
1.2k
views
Comment: Comment: error: Couldn't open trackDb.txt in hubCheck
2.3 years ago by LDT ▴ 340
0
votes
1
reply
1.2k
views
Comment: Comment: error: Couldn't open trackDb.txt in hubCheck
2.3 years ago by LDT ▴ 340
5
votes
6
replies
1.2k
views
error: Couldn't open trackDb.txt in hubCheck
UCSC hubCheck
updated 2.2 years ago by 11k • written 2.3 years ago by ▴ 340
0
votes
0
replies
1.3k
views
Comment: Comment: Error while converting a bed to bigBed file
2.3 years ago by LDT ▴ 340
0
votes
1
reply
1.3k
views
Comment: Comment: Error while converting a bed to bigBed file
2.3 years ago by LDT ▴ 340
0
votes
0
replies
816
views
Comment: Comment: Convert gff to bed, including non coding elements
2.3 years ago by LDT ▴ 340
4
votes
2
replies
816
views
Convert gff to bed, including non coding elements
bed RNA non-coding gff
2.3 years ago by LDT ▴ 340
0
votes
0
replies
1.3k
views
Answer: Answer: How to change colors in boxplot in R?
updated 2.3 years ago by 44k • written 2.3 years ago by ▴ 340
4
votes
4
replies
1.3k
views
Error while converting a bed to bigBed file
bed UCSC kentUtils bigBed
2.3 years ago by LDT ▴ 340
1
vote
1
reply
913
views
Calculate missing genotypes per sample with plink2
missing vcf plink2 genotypes
updated 2.3 years ago by 11k • written 2.3 years ago by ▴ 340
0
votes
1
reply
66k
views
Comment: Comment: How To Sort Bed Format File
2.3 years ago by LDT ▴ 340
0
votes
0
replies
1.5k
views
Comment: Comment: How to convert transcript counts to gene counts
2.3 years ago by LDT ▴ 340
1
vote
4
replies
1.5k
views
How to convert transcript counts to gene counts
tximport r gene_counts RNAseq
updated 2.3 years ago by ▴ 550 • written 2.3 years ago by ▴ 340
0
votes
0
replies
5.5k
views
Comment: Comment: Arabidopsis Araport11 genome annotation file
2.3 years ago by LDT ▴ 340
3
votes
5
replies
3.3k
views
Count missing and non missing values in a VCF file
vcf bcftools vcftools
updated 2.3 years ago by ▴ 520 • written 2.3 years ago by ▴ 340
1
vote
1
reply
882
views
Answer: Answer: How to change values on X-axis in matplotlib ?
2.3 years ago by LDT ▴ 340
0
votes
1
reply
3.3k
views
Comment: Comment: Count missing and non missing values in a VCF file
2.3 years ago by LDT ▴ 340
0
votes
1
reply
5.5k
views
Comment: Comment: Arabidopsis Araport11 genome annotation file
2.3 years ago by LDT ▴ 340
8
votes
8
replies
1.3k
views
How to convert heterozygous variants to ./. in a VCF file?
heterozygosity vcf bcftools
updated 2.4 years ago by 44k • written 2.4 years ago by ▴ 340
0
votes
1
reply
1.3k
views
Comment: Comment: How to convert heterozygous variants to ./. in a VCF file?
2.4 years ago by LDT ▴ 340
0
votes
1
reply
1.3k
views
Comment: Comment: How to convert heterozygous variants to ./. in a VCF file?
2.4 years ago by LDT ▴ 340
0
votes
0
replies
1.3k
views
Comment: Comment: How to convert heterozygous variants to ./. in a VCF file?
updated 2.4 years ago by 44k • written 2.4 years ago by ▴ 340
0
votes
0
replies
1.5k
views
Comment: Comment: How do you obtain a list of transcription factors from a genome?
2.4 years ago by LDT ▴ 340
0
votes
1
reply
1.5k
views
Comment: Comment: How do you obtain a list of transcription factors from a genome?
2.4 years ago by LDT ▴ 340
2
votes
1
reply
1.5k
views
Answer: Answer: How do you obtain a list of transcription factors from a genome?
2.4 years ago by LDT ▴ 340
1
vote
0
replies
1.0k
views
Comment: Comment: How do I understand -Z option of infernal cmscan?
2.4 years ago by LDT ▴ 340
3
votes
1
reply
1.0k
views
Answer: Answer: How do I understand -Z option of infernal cmscan?
2.4 years ago by LDT ▴ 340
0
votes
1
reply
1.9k
views
Comment: Comment: How to convert a for loop to a Job-array in LSF cluster
2.4 years ago by LDT ▴ 340
3
votes
2
replies
3.3k
views
Answer: Answer: How to select rows which has NA in any column in the dataframe in R?
2.4 years ago by LDT ▴ 340
7
votes
6
replies
1.9k
views
How to convert a for loop to a Job-array in LSF cluster
lsf cluster-computing Job-array hpc
updated 2.4 years ago by 11k • written 2.4 years ago by ▴ 340
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