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Answer: Answer: Defining Sex Chromosomes in PLINK for a Camel Genome
14 hours ago by chrchang523 11k
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393
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Comment: Comment: making psam file for plink2
7 days ago by chrchang523 11k
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510
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Comment: Comment: Plink removing a lot of samples
6 weeks ago by chrchang523 11k
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311
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Comment: Comment: Why are phenotype values missing in PLINK analysis despite no NA values in the i
6 weeks ago by chrchang523 11k
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812
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Comment: Comment: How to remove duplicated SNPs based on MAF with Plink?
10 weeks ago by chrchang523 11k
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2
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781
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Answer: Answer: Challenges Using KING for Relatedness Analysis with Non-Standard Genomes (8000 C
3 months ago by chrchang523 11k
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411
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Answer: Answer: 1000 genome dataset download
5 months ago by chrchang523 11k
2
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1
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567
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Answer: Answer: In Plink2, when converting a VCF file to bed format - how to retain original chr
6 months ago by chrchang523 11k
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788
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Answer: Answer: Ancestry estimation using 1000 genomes as reference
7 months ago by chrchang523 11k
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0
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1.0k
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Answer: Answer: PLINK error doing a GWAS
7 months ago by chrchang523 11k
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1.0k
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Comment: Comment: PLINK error doing a GWAS
7 months ago by chrchang523 11k
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1.1k
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Comment: Comment: Segmentation fault PLINK 1.90b
7 months ago by chrchang523 11k
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1
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1.1k
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Comment: Comment: Segmentation fault PLINK 1.90b
7 months ago by chrchang523 11k
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1
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1.1k
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Comment: Comment: Segmentation fault PLINK 1.90b
7 months ago by chrchang523 11k
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0
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502
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Answer: Answer: Multi allelic variants extraction with plink
8 months ago by chrchang523 11k
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0
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1.4k
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Answer: Answer: looking for 1000g hg38 reference data to anchor with my genomic data to plot th
8 months ago by chrchang523 11k
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0
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977
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Answer: Answer: How can I get an allele count table from a .vcf file?
8 months ago by chrchang523 11k
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0
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499
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Answer: Answer: Generating .bed file and .map file for polyploid vcf file through plink
10 months ago by chrchang523 11k
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1
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1.6k
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Answer: Answer: Force PLINK2 to neglect chrX as the sex chromosome
11 months ago by chrchang523 11k
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0
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1.3k
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Answer: Answer: Easy way to find out which allele is minor allele from bed file?
11 months ago by chrchang523 11k
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0
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2.9k
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Comment: Comment: Problem to remove subset of patients with plink
11 months ago by chrchang523 11k
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0
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793
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Comment: Comment: PLINK multivariable GLM output: p-value without BETA and SE
11 months ago by chrchang523 11k
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2.0k
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Comment: Comment: PLINK p value returning NA
11 months ago by chrchang523 11k
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863
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Answer: Answer: PCA results from PLINK and Hail vastly different
13 months ago by chrchang523 11k
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1
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1.8k
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Comment: Comment: Different relatedness estimates by PLINK and VCFTOOLS despite same method
13 months ago by chrchang523 11k
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1
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1.2k
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Comment: Comment: merging VCF files using bcftools - everyone becomes related
13 months ago by chrchang523 11k
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3
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1.8k
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Comment: Comment: Different relatedness estimates by PLINK and VCFTOOLS despite same method
13 months ago by chrchang523 11k
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0
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1.0k
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Comment: Comment: Extract bfile from .bgen using a given .bim to handle duplicated snps
13 months ago by chrchang523 11k
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1
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981
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Answer: Answer: allele matching between identical genotypes
14 months ago by chrchang523 11k
2
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1
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733
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Answer: Answer: number of homozygotes with phenotype
14 months ago by chrchang523 11k
2
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1
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844
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Answer: Answer: HWE test different result according Pheno data
15 months ago by chrchang523 11k
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1
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971
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Answer: Answer: Clumping with r2=0 and 250kb radius in plink
16 months ago by chrchang523 11k
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0
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1.3k
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Comment: Comment: PLINK Error: No valid entries in --score file
17 months ago by chrchang523 11k
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0
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822
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Answer: Answer: Plink Error
17 months ago by chrchang523 11k
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0
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1.5k
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Comment: Comment: Allele frequncies in plink including physical position in the output
17 months ago by chrchang523 11k
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1
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1.5k
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Answer: Answer: Allele frequncies in plink including physical position in the output
17 months ago by chrchang523 11k
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1
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1.5k
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Comment: Comment: Allele frequncies in plink including physical position in the output
17 months ago by chrchang523 11k
1
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0
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693
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Comment: Comment: Successful NCBI NIAID Codeathon on VCF Files in SARS-CoV-2 Genomics
18 months ago by chrchang523 11k
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0
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1.6k
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Answer: Answer: Is there a way to get a list of all homogygous sites for each sample with plink
18 months ago by chrchang523 11k
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0
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827
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Comment: Comment: Restricting vcf entries based on ID length
18 months ago by chrchang523 11k
2
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0
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933
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Answer: Answer: Filter VCF File by VCF Format Variants
18 months ago by chrchang523 11k
3
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0
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1.2k
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Answer: Answer: reading pgen file into R
19 months ago by chrchang523 11k
1
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0
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1.1k
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Comment: Comment: simulation
19 months ago by chrchang523 11k
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1
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2.2k
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Comment: Comment: PLINK linear association testing command with an interaction and 2 covariates te
20 months ago by chrchang523 11k
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1
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2.2k
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Comment: Comment: PLINK linear association testing command with an interaction and 2 covariates te
20 months ago by chrchang523 11k
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1
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2.2k
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Answer: Answer: PLINK linear association testing command with an interaction and 2 covariates te
20 months ago by chrchang523 11k
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0
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736
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Comment: Comment: plink: king table, why kinship=0.5 and IBS0=0
20 months ago by chrchang523 11k
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0
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894
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Answer: Answer: Using -r2 in plink1.9 with .bim file that has CHR:POS entries
20 months ago by chrchang523 11k
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0
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783
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Answer: Answer: VCFTools MAF Filter needs Efficiency Inquiry
20 months ago by chrchang523 11k
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0
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820
views
Answer: Answer: Assistance Needed with Converting VCF File for BOLT-LMM Usage
20 months ago by chrchang523 11k
913 results • Page 1 of 19
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