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274
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Answer: Answer: 1000 genome dataset download
4 weeks ago by chrchang523 11k
2
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1
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389
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Answer: Answer: In Plink2, when converting a VCF file to bed format - how to retain original chr
10 weeks ago by chrchang523 11k
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0
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452
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Answer: Answer: Ancestry estimation using 1000 genomes as reference
11 weeks ago by chrchang523 11k
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0
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569
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Answer: Answer: PLINK error doing a GWAS
12 weeks ago by chrchang523 11k
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0
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569
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Comment: Comment: PLINK error doing a GWAS
12 weeks ago by chrchang523 11k
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0
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708
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Comment: Comment: Segmentation fault PLINK 1.90b
3 months ago by chrchang523 11k
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1
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708
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Comment: Comment: Segmentation fault PLINK 1.90b
3 months ago by chrchang523 11k
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1
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708
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Comment: Comment: Segmentation fault PLINK 1.90b
3 months ago by chrchang523 11k
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0
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325
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Answer: Answer: Multi allelic variants extraction with plink
3 months ago by chrchang523 11k
1
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0
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870
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Answer: Answer: looking for 1000g hg38 reference data to anchor with my genomic data to plot th
4 months ago by chrchang523 11k
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0
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616
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Answer: Answer: How can I get an allele count table from a .vcf file?
4 months ago by chrchang523 11k
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0
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359
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Answer: Answer: Generating .bed file and .map file for polyploid vcf file through plink
6 months ago by chrchang523 11k
1
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1
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1.0k
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Answer: Answer: Force PLINK2 to neglect chrX as the sex chromosome
6 months ago by chrchang523 11k
0
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0
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826
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Answer: Answer: Easy way to find out which allele is minor allele from bed file?
6 months ago by chrchang523 11k
1
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0
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2.7k
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Comment: Comment: Problem to remove subset of patients with plink
7 months ago by chrchang523 11k
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0
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627
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Comment: Comment: PLINK multivariable GLM output: p-value without BETA and SE
7 months ago by chrchang523 11k
0
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0
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1.6k
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Comment: Comment: PLINK p value returning NA
7 months ago by chrchang523 11k
1
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0
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658
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Answer: Answer: PCA results from PLINK and Hail vastly different
9 months ago by chrchang523 11k
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1
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1.3k
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Comment: Comment: Different relatedness estimates by PLINK and VCFTOOLS despite same method
9 months ago by chrchang523 11k
0
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1
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864
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Comment: Comment: merging VCF files using bcftools - everyone becomes related
9 months ago by chrchang523 11k
1
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3
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1.3k
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Comment: Comment: Different relatedness estimates by PLINK and VCFTOOLS despite same method
9 months ago by chrchang523 11k
0
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0
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793
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Comment: Comment: Extract bfile from .bgen using a given .bim to handle duplicated snps
9 months ago by chrchang523 11k
0
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1
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771
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Answer: Answer: allele matching between identical genotypes
9 months ago by chrchang523 11k
2
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1
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564
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Answer: Answer: number of homozygotes with phenotype
10 months ago by chrchang523 11k
2
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1
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697
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Answer: Answer: HWE test different result according Pheno data
10 months ago by chrchang523 11k
1
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1
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760
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Answer: Answer: Clumping with r2=0 and 250kb radius in plink
12 months ago by chrchang523 11k
0
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0
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948
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Comment: Comment: PLINK Error: No valid entries in --score file
12 months ago by chrchang523 11k
0
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0
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657
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Answer: Answer: Plink Error
12 months ago by chrchang523 11k
0
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0
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1.2k
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Comment: Comment: Allele frequncies in plink including physical position in the output
13 months ago by chrchang523 11k
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1
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1.2k
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Answer: Answer: Allele frequncies in plink including physical position in the output
13 months ago by chrchang523 11k
0
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1
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1.2k
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Comment: Comment: Allele frequncies in plink including physical position in the output
13 months ago by chrchang523 11k
1
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0
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587
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Comment: Comment: Successful NCBI NIAID Codeathon on VCF Files in SARS-CoV-2 Genomics
14 months ago by chrchang523 11k
0
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0
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1.4k
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Answer: Answer: Is there a way to get a list of all homogygous sites for each sample with plink
14 months ago by chrchang523 11k
0
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0
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666
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Comment: Comment: Restricting vcf entries based on ID length
14 months ago by chrchang523 11k
2
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0
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761
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Answer: Answer: Filter VCF File by VCF Format Variants
14 months ago by chrchang523 11k
3
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0
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933
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Answer: Answer: reading pgen file into R
15 months ago by chrchang523 11k
1
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0
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921
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Comment: Comment: simulation
15 months ago by chrchang523 11k
0
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1
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1.8k
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Comment: Comment: PLINK linear association testing command with an interaction and 2 covariates te
16 months ago by chrchang523 11k
0
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1
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1.8k
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Comment: Comment: PLINK linear association testing command with an interaction and 2 covariates te
16 months ago by chrchang523 11k
0
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1
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1.8k
views
Answer: Answer: PLINK linear association testing command with an interaction and 2 covariates te
16 months ago by chrchang523 11k
0
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0
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635
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Comment: Comment: plink: king table, why kinship=0.5 and IBS0=0
16 months ago by chrchang523 11k
0
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0
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758
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Answer: Answer: Using -r2 in plink1.9 with .bim file that has CHR:POS entries
16 months ago by chrchang523 11k
0
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0
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614
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Answer: Answer: VCFTools MAF Filter needs Efficiency Inquiry
16 months ago by chrchang523 11k
0
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0
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654
views
Answer: Answer: Assistance Needed with Converting VCF File for BOLT-LMM Usage
16 months ago by chrchang523 11k
2
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0
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1.3k
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Answer: Answer: PLINK1.9 check sex problem
16 months ago by chrchang523 11k
0
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0
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738
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Answer: Answer: PLINK, Unphased heterozygous hardcalls in partially-phased variants are poorly r
17 months ago by chrchang523 11k
1
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0
replies
849
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Answer: Answer: Base-10 log transformed P-values and clump with plink v.1.9
17 months ago by chrchang523 11k
2
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0
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1.3k
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Comment: Comment: How to calculate kinship matrix table from vcf file
17 months ago by chrchang523 11k
1
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0
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588
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Answer: Answer: How do I restrict to only hm3 SNPs for plink analyses?
18 months ago by chrchang523 11k
0
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0
replies
970
views
Comment: Comment: PLINK not converting entire vcf to bed file
18 months ago by chrchang523 11k
907 results • Page 1 of 19
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