Latest
Open
Jobs
Tutorials
Tags
About
FAQ
Community
Planet
New Post
Log In
New Post
Latest
Open
News
Jobs
Tutorials
Forum
Tags
Planet
Users
Log In
Sign Up
About
Profile
Posts
Awards
Show
all
questions
tools
blogs
news
tutorials
forum
answers
comments
1
vote
0
replies
289
views
Answer:
Answer: Force PLINK2 to neglect chrX as the sex chromosome
3 days ago by
chrchang523
10k
0
votes
0
replies
334
views
Answer:
Answer: Easy way to find out which allele is minor allele from bed file?
3 days ago by
chrchang523
10k
1
vote
0
replies
2.5k
views
Comment:
Comment: Problem to remove subset of patients with plink
14 days ago by
chrchang523
10k
0
votes
0
replies
480
views
Comment:
Comment: PLINK multivariable GLM output: p-value without BETA and SE
28 days ago by
chrchang523
10k
0
votes
0
replies
1.2k
views
Comment:
Comment: PLINK p value returning NA
28 days ago by
chrchang523
10k
1
vote
0
replies
428
views
Answer:
Answer: PCA results from PLINK and Hail vastly different
10 weeks ago by
chrchang523
10k
0
votes
1
reply
757
views
Comment:
Comment: Different relatedness estimates by PLINK and VCFTOOLS despite same method
12 weeks ago by
chrchang523
10k
0
votes
1
reply
557
views
Comment:
Comment: merging VCF files using bcftools - everyone becomes related
12 weeks ago by
chrchang523
10k
1
vote
3
replies
757
views
Comment:
Comment: Different relatedness estimates by PLINK and VCFTOOLS despite same method
12 weeks ago by
chrchang523
10k
0
votes
0
replies
496
views
Comment:
Comment: Extract bfile from .bgen using a given .bim to handle duplicated snps
12 weeks ago by
chrchang523
10k
0
votes
1
reply
523
views
Answer:
Answer: allele matching between identical genotypes
3 months ago by
chrchang523
10k
2
votes
1
reply
380
views
Answer:
Answer: number of homozygotes with phenotype
3 months ago by
chrchang523
10k
2
votes
1
reply
546
views
Answer:
Answer: HWE test different result according Pheno data
4 months ago by
chrchang523
10k
1
vote
1
reply
469
views
Answer:
Answer: Clumping with r2=0 and 250kb radius in plink
5 months ago by
chrchang523
10k
0
votes
0
replies
635
views
Comment:
Comment: PLINK Error: No valid entries in --score file
6 months ago by
chrchang523
10k
0
votes
0
replies
493
views
Answer:
Answer: Plink Error
6 months ago by
chrchang523
10k
0
votes
0
replies
872
views
Comment:
Comment: Allele frequncies in plink including physical position in the output
6 months ago by
chrchang523
10k
0
votes
1
reply
872
views
Answer:
Answer: Allele frequncies in plink including physical position in the output
6 months ago by
chrchang523
10k
0
votes
1
reply
872
views
Comment:
Comment: Allele frequncies in plink including physical position in the output
6 months ago by
chrchang523
10k
1
vote
0
replies
471
views
Comment:
Comment: Successful NCBI NIAID Codeathon on VCF Files in SARS-CoV-2 Genomics
7 months ago by
chrchang523
10k
0
votes
0
replies
1.2k
views
Answer:
Answer: Is there a way to get a list of all homogygous sites for each sample with plink
7 months ago by
chrchang523
10k
0
votes
0
replies
522
views
Comment:
Comment: Restricting vcf entries based on ID length
7 months ago by
chrchang523
10k
2
votes
0
replies
580
views
Answer:
Answer: Filter VCF File by VCF Format Variants
7 months ago by
chrchang523
10k
3
votes
0
replies
676
views
Answer:
Answer: reading pgen file into R
8 months ago by
chrchang523
10k
1
vote
0
replies
723
views
Comment:
Comment: simulation
8 months ago by
chrchang523
10k
0
votes
1
reply
1.3k
views
Comment:
Comment: PLINK linear association testing command with an interaction and 2 covariates te
9 months ago by
chrchang523
10k
0
votes
1
reply
1.3k
views
Comment:
Comment: PLINK linear association testing command with an interaction and 2 covariates te
9 months ago by
chrchang523
10k
0
votes
1
reply
1.3k
views
Answer:
Answer: PLINK linear association testing command with an interaction and 2 covariates te
9 months ago by
chrchang523
10k
0
votes
0
replies
510
views
Comment:
Comment: plink: king table, why kinship=0.5 and IBS0=0
9 months ago by
chrchang523
10k
0
votes
0
replies
607
views
Answer:
Answer: Using -r2 in plink1.9 with .bim file that has CHR:POS entries
9 months ago by
chrchang523
10k
0
votes
0
replies
452
views
Answer:
Answer: VCFTools MAF Filter needs Efficiency Inquiry
9 months ago by
chrchang523
10k
0
votes
0
replies
494
views
Answer:
Answer: Assistance Needed with Converting VCF File for BOLT-LMM Usage
9 months ago by
chrchang523
10k
0
votes
0
replies
887
views
Answer:
Answer: PLINK1.9 check sex problem
10 months ago by
chrchang523
10k
0
votes
0
replies
602
views
Answer:
Answer: PLINK, Unphased heterozygous hardcalls in partially-phased variants are poorly r
10 months ago by
chrchang523
10k
1
vote
0
replies
655
views
Answer:
Answer: Base-10 log transformed P-values and clump with plink v.1.9
10 months ago by
chrchang523
10k
2
votes
0
replies
916
views
Comment:
Comment: How to calculate kinship matrix table from vcf file
11 months ago by
chrchang523
10k
1
vote
0
replies
459
views
Answer:
Answer: How do I restrict to only hm3 SNPs for plink analyses?
11 months ago by
chrchang523
10k
0
votes
0
replies
819
views
Comment:
Comment: PLINK not converting entire vcf to bed file
11 months ago by
chrchang523
10k
0
votes
0
replies
1.2k
views
Comment:
Comment: Linkage Disequilibrium with Plink
11 months ago by
chrchang523
10k
0
votes
1
reply
1.2k
views
Answer:
Answer: Linkage Disequilibrium with Plink
12 months ago by
chrchang523
10k
2
votes
0
replies
2.1k
views
Answer:
Answer: KING kinship inference error
12 months ago by
chrchang523
10k
1
vote
0
replies
748
views
Answer:
Answer: Where do I get a large reference VCF?
12 months ago by
chrchang523
10k
1
vote
1
reply
891
views
Comment:
Comment: PLINK Error: Invalid QUAL value on line
13 months ago by
chrchang523
10k
1
vote
1
reply
891
views
Answer:
Answer: PLINK Error: Invalid QUAL value on line
13 months ago by
chrchang523
10k
2
votes
0
replies
757
views
Answer:
Answer: Calculate the kinship matrix from NGS data
13 months ago by
chrchang523
10k
0
votes
0
replies
453
views
Answer:
Answer: invalid --hwe parameter sequence error when doing QC
14 months ago by
chrchang523
10k
0
votes
0
replies
1.1k
views
Answer:
Answer: make BED file from existing BIM and FAM files
15 months ago by
chrchang523
10k
0
votes
1
reply
1.9k
views
Comment:
Comment: PLINK2 selecting variants based on INFO score
15 months ago by
chrchang523
10k
0
votes
1
reply
1.9k
views
Comment:
Comment: PLINK2 selecting variants based on INFO score
15 months ago by
chrchang523
10k
0
votes
1
reply
1.9k
views
Comment:
Comment: PLINK2 selecting variants based on INFO score
15 months ago by
chrchang523
10k
895 results • Page
1 of 18
Content
Search
Users
Tags
Badges
Help
About
FAQ
Access
RSS
API
Stats
Use of this site constitutes acceptance of our
User Agreement and Privacy Policy
.
Powered by the
version 2.3.6