Profile Posts Awards
Show
all questions tools blogs news tutorials forum answers comments
1
vote
0
replies
283
views
Answer: Answer: 1000 genome dataset download
4 weeks ago by chrchang523 11k
2
votes
1
reply
392
views
Answer: Answer: In Plink2, when converting a VCF file to bed format - how to retain original chr
10 weeks ago by chrchang523 11k
0
votes
0
replies
458
views
Answer: Answer: Ancestry estimation using 1000 genomes as reference
11 weeks ago by chrchang523 11k
0
votes
0
replies
579
views
Answer: Answer: PLINK error doing a GWAS
3 months ago by chrchang523 11k
0
votes
0
replies
579
views
Comment: Comment: PLINK error doing a GWAS
3 months ago by chrchang523 11k
0
votes
0
replies
717
views
Comment: Comment: Segmentation fault PLINK 1.90b
3 months ago by chrchang523 11k
0
votes
1
reply
717
views
Comment: Comment: Segmentation fault PLINK 1.90b
3 months ago by chrchang523 11k
0
votes
1
reply
717
views
Comment: Comment: Segmentation fault PLINK 1.90b
3 months ago by chrchang523 11k
0
votes
0
replies
329
views
Answer: Answer: Multi allelic variants extraction with plink
3 months ago by chrchang523 11k
1
vote
0
replies
875
views
Answer: Answer: looking for 1000g hg38 reference data to anchor with my genomic data to plot th
4 months ago by chrchang523 11k
0
votes
0
replies
622
views
Answer: Answer: How can I get an allele count table from a .vcf file?
4 months ago by chrchang523 11k
0
votes
0
replies
363
views
Answer: Answer: Generating .bed file and .map file for polyploid vcf file through plink
6 months ago by chrchang523 11k
1
vote
1
reply
1.0k
views
Answer: Answer: Force PLINK2 to neglect chrX as the sex chromosome
6 months ago by chrchang523 11k
0
votes
0
replies
844
views
Answer: Answer: Easy way to find out which allele is minor allele from bed file?
6 months ago by chrchang523 11k
1
vote
0
replies
2.7k
views
Comment: Comment: Problem to remove subset of patients with plink
7 months ago by chrchang523 11k
0
votes
0
replies
631
views
Comment: Comment: PLINK multivariable GLM output: p-value without BETA and SE
7 months ago by chrchang523 11k
0
votes
0
replies
1.6k
views
Comment: Comment: PLINK p value returning NA
7 months ago by chrchang523 11k
1
vote
0
replies
666
views
Answer: Answer: PCA results from PLINK and Hail vastly different
9 months ago by chrchang523 11k
0
votes
1
reply
1.3k
views
Comment: Comment: Different relatedness estimates by PLINK and VCFTOOLS despite same method
9 months ago by chrchang523 11k
0
votes
1
reply
867
views
Comment: Comment: merging VCF files using bcftools - everyone becomes related
9 months ago by chrchang523 11k
1
vote
3
replies
1.3k
views
Comment: Comment: Different relatedness estimates by PLINK and VCFTOOLS despite same method
9 months ago by chrchang523 11k
0
votes
0
replies
800
views
Comment: Comment: Extract bfile from .bgen using a given .bim to handle duplicated snps
9 months ago by chrchang523 11k
0
votes
1
reply
775
views
Answer: Answer: allele matching between identical genotypes
9 months ago by chrchang523 11k
2
votes
1
reply
570
views
Answer: Answer: number of homozygotes with phenotype
10 months ago by chrchang523 11k
2
votes
1
reply
697
views
Answer: Answer: HWE test different result according Pheno data
10 months ago by chrchang523 11k
1
vote
1
reply
765
views
Answer: Answer: Clumping with r2=0 and 250kb radius in plink
12 months ago by chrchang523 11k
0
votes
0
replies
954
views
Comment: Comment: PLINK Error: No valid entries in --score file
12 months ago by chrchang523 11k
0
votes
0
replies
658
views
Answer: Answer: Plink Error
12 months ago by chrchang523 11k
0
votes
0
replies
1.2k
views
Comment: Comment: Allele frequncies in plink including physical position in the output
13 months ago by chrchang523 11k
0
votes
1
reply
1.2k
views
Answer: Answer: Allele frequncies in plink including physical position in the output
13 months ago by chrchang523 11k
0
votes
1
reply
1.2k
views
Comment: Comment: Allele frequncies in plink including physical position in the output
13 months ago by chrchang523 11k
1
vote
0
replies
590
views
Comment: Comment: Successful NCBI NIAID Codeathon on VCF Files in SARS-CoV-2 Genomics
14 months ago by chrchang523 11k
0
votes
0
replies
1.4k
views
Answer: Answer: Is there a way to get a list of all homogygous sites for each sample with plink
14 months ago by chrchang523 11k
0
votes
0
replies
668
views
Comment: Comment: Restricting vcf entries based on ID length
14 months ago by chrchang523 11k
2
votes
0
replies
763
views
Answer: Answer: Filter VCF File by VCF Format Variants
14 months ago by chrchang523 11k
3
votes
0
replies
936
views
Answer: Answer: reading pgen file into R
15 months ago by chrchang523 11k
1
vote
0
replies
926
views
Comment: Comment: simulation
15 months ago by chrchang523 11k
0
votes
1
reply
1.8k
views
Comment: Comment: PLINK linear association testing command with an interaction and 2 covariates te
16 months ago by chrchang523 11k
0
votes
1
reply
1.8k
views
Comment: Comment: PLINK linear association testing command with an interaction and 2 covariates te
16 months ago by chrchang523 11k
0
votes
1
reply
1.8k
views
Answer: Answer: PLINK linear association testing command with an interaction and 2 covariates te
16 months ago by chrchang523 11k
0
votes
0
replies
636
views
Comment: Comment: plink: king table, why kinship=0.5 and IBS0=0
16 months ago by chrchang523 11k
0
votes
0
replies
762
views
Answer: Answer: Using -r2 in plink1.9 with .bim file that has CHR:POS entries
16 months ago by chrchang523 11k
0
votes
0
replies
616
views
Answer: Answer: VCFTools MAF Filter needs Efficiency Inquiry
16 months ago by chrchang523 11k
0
votes
0
replies
657
views
Answer: Answer: Assistance Needed with Converting VCF File for BOLT-LMM Usage
16 months ago by chrchang523 11k
2
votes
0
replies
1.3k
views
Answer: Answer: PLINK1.9 check sex problem
16 months ago by chrchang523 11k
0
votes
0
replies
741
views
Answer: Answer: PLINK, Unphased heterozygous hardcalls in partially-phased variants are poorly r
17 months ago by chrchang523 11k
1
vote
0
replies
853
views
Answer: Answer: Base-10 log transformed P-values and clump with plink v.1.9
17 months ago by chrchang523 11k
2
votes
0
replies
1.3k
views
Comment: Comment: How to calculate kinship matrix table from vcf file
18 months ago by chrchang523 11k
1
vote
0
replies
590
views
Answer: Answer: How do I restrict to only hm3 SNPs for plink analyses?
18 months ago by chrchang523 11k
0
votes
0
replies
973
views
Comment: Comment: PLINK not converting entire vcf to bed file
18 months ago by chrchang523 11k
907 results • Page 1 of 19
Content Search
Users
Tags
Badges
Help About
FAQ
Access RSS
API
Stats

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.

Powered by the version 2.3.6