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2
votes
1
reply
444
views
Answer:
Answer: How is PLINK obtaining p-values and coefficients for linear regression
22 days ago by
chrchang523
11k
0
votes
0
replies
399
views
Answer:
Answer: Defining Sex Chromosomes in PLINK for a Camel Genome
11 weeks ago by
chrchang523
11k
1
vote
1
reply
707
views
Comment:
Comment: making psam file for plink2
12 weeks ago by
chrchang523
11k
0
votes
0
replies
856
views
Comment:
Comment: Plink removing a lot of samples
3 months ago by
chrchang523
11k
0
votes
0
replies
549
views
Comment:
Comment: Why are phenotype values missing in PLINK analysis despite no NA values in the i
3 months ago by
chrchang523
11k
1
vote
0
replies
1.0k
views
Comment:
Comment: How to remove duplicated SNPs based on MAF with Plink?
4 months ago by
chrchang523
11k
1
vote
2
replies
1.0k
views
Answer:
Answer: Challenges Using KING for Relatedness Analysis with Non-Standard Genomes (8000 C
5 months ago by
chrchang523
11k
1
vote
0
replies
600
views
Answer:
Answer: 1000 genome dataset download
7 months ago by
chrchang523
11k
2
votes
1
reply
754
views
Answer:
Answer: In Plink2, when converting a VCF file to bed format - how to retain original chr
9 months ago by
chrchang523
11k
0
votes
0
replies
1.2k
views
Answer:
Answer: Ancestry estimation using 1000 genomes as reference
9 months ago by
chrchang523
11k
0
votes
0
replies
1.4k
views
Answer:
Answer: PLINK error doing a GWAS
9 months ago by
chrchang523
11k
0
votes
0
replies
1.4k
views
Comment:
Comment: PLINK error doing a GWAS
9 months ago by
chrchang523
11k
0
votes
0
replies
1.3k
views
Comment:
Comment: Segmentation fault PLINK 1.90b
9 months ago by
chrchang523
11k
0
votes
1
reply
1.3k
views
Comment:
Comment: Segmentation fault PLINK 1.90b
10 months ago by
chrchang523
11k
0
votes
1
reply
1.3k
views
Comment:
Comment: Segmentation fault PLINK 1.90b
10 months ago by
chrchang523
11k
0
votes
0
replies
671
views
Answer:
Answer: Multi allelic variants extraction with plink
10 months ago by
chrchang523
11k
1
vote
0
replies
1.9k
views
Answer:
Answer: looking for 1000g hg38 reference data to anchor with my genomic data to plot th
11 months ago by
chrchang523
11k
0
votes
0
replies
1.2k
views
Answer:
Answer: How can I get an allele count table from a .vcf file?
11 months ago by
chrchang523
11k
0
votes
0
replies
661
views
Answer:
Answer: Generating .bed file and .map file for polyploid vcf file through plink
13 months ago by
chrchang523
11k
1
vote
1
reply
2.1k
views
Answer:
Answer: Force PLINK2 to neglect chrX as the sex chromosome
13 months ago by
chrchang523
11k
0
votes
0
replies
1.6k
views
Answer:
Answer: Easy way to find out which allele is minor allele from bed file?
13 months ago by
chrchang523
11k
1
vote
0
replies
3.1k
views
Comment:
Comment: Problem to remove subset of patients with plink
14 months ago by
chrchang523
11k
0
votes
0
replies
963
views
Comment:
Comment: PLINK multivariable GLM output: p-value without BETA and SE
14 months ago by
chrchang523
11k
0
votes
0
replies
2.2k
views
Comment:
Comment: PLINK p value returning NA
14 months ago by
chrchang523
11k
1
vote
0
replies
1.0k
views
Answer:
Answer: PCA results from PLINK and Hail vastly different
15 months ago by
chrchang523
11k
0
votes
1
reply
2.1k
views
Comment:
Comment: Different relatedness estimates by PLINK and VCFTOOLS despite same method
16 months ago by
chrchang523
11k
0
votes
1
reply
1.4k
views
Comment:
Comment: merging VCF files using bcftools - everyone becomes related
16 months ago by
chrchang523
11k
1
vote
3
replies
2.1k
views
Comment:
Comment: Different relatedness estimates by PLINK and VCFTOOLS despite same method
16 months ago by
chrchang523
11k
0
votes
0
replies
1.3k
views
Comment:
Comment: Extract bfile from .bgen using a given .bim to handle duplicated snps
16 months ago by
chrchang523
11k
0
votes
1
reply
1.2k
views
Answer:
Answer: allele matching between identical genotypes
16 months ago by
chrchang523
11k
2
votes
1
reply
864
views
Answer:
Answer: number of homozygotes with phenotype
17 months ago by
chrchang523
11k
2
votes
1
reply
983
views
Answer:
Answer: HWE test different result according Pheno data
17 months ago by
chrchang523
11k
1
vote
1
reply
1.1k
views
Answer:
Answer: Clumping with r2=0 and 250kb radius in plink
19 months ago by
chrchang523
11k
0
votes
0
replies
1.5k
views
Comment:
Comment: PLINK Error: No valid entries in --score file
19 months ago by
chrchang523
11k
0
votes
0
replies
1.0k
views
Answer:
Answer: Plink Error
19 months ago by
chrchang523
11k
0
votes
0
replies
1.8k
views
Comment:
Comment: Allele frequncies in plink including physical position in the output
20 months ago by
chrchang523
11k
0
votes
1
reply
1.8k
views
Answer:
Answer: Allele frequncies in plink including physical position in the output
20 months ago by
chrchang523
11k
0
votes
1
reply
1.8k
views
Comment:
Comment: Allele frequncies in plink including physical position in the output
20 months ago by
chrchang523
11k
1
vote
0
replies
832
views
Comment:
Comment: Successful NCBI NIAID Codeathon on VCF Files in SARS-CoV-2 Genomics
21 months ago by
chrchang523
11k
0
votes
0
replies
1.8k
views
Answer:
Answer: Is there a way to get a list of all homogygous sites for each sample with plink
21 months ago by
chrchang523
11k
0
votes
0
replies
980
views
Comment:
Comment: Restricting vcf entries based on ID length
21 months ago by
chrchang523
11k
2
votes
0
replies
1.0k
views
Answer:
Answer: Filter VCF File by VCF Format Variants
21 months ago by
chrchang523
11k
3
votes
0
replies
1.3k
views
Answer:
Answer: reading pgen file into R
22 months ago by
chrchang523
11k
1
vote
0
replies
1.3k
views
Comment:
Comment: simulation
22 months ago by
chrchang523
11k
0
votes
1
reply
2.6k
views
Comment:
Comment: PLINK linear association testing command with an interaction and 2 covariates te
22 months ago by
chrchang523
11k
0
votes
1
reply
2.6k
views
Comment:
Comment: PLINK linear association testing command with an interaction and 2 covariates te
23 months ago by
chrchang523
11k
0
votes
1
reply
2.6k
views
Answer:
Answer: PLINK linear association testing command with an interaction and 2 covariates te
23 months ago by
chrchang523
11k
0
votes
0
replies
875
views
Comment:
Comment: plink: king table, why kinship=0.5 and IBS0=0
23 months ago by
chrchang523
11k
0
votes
0
replies
1.1k
views
Answer:
Answer: Using -r2 in plink1.9 with .bim file that has CHR:POS entries
23 months ago by
chrchang523
11k
0
votes
0
replies
927
views
Answer:
Answer: VCFTools MAF Filter needs Efficiency Inquiry
23 months ago by
chrchang523
11k
914 results • Page
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