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2
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0
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1.6k
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Answer: Answer: PLINK1.9 check sex problem
21 months ago by chrchang523 11k
0
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0
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876
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Answer: Answer: PLINK, Unphased heterozygous hardcalls in partially-phased variants are poorly r
22 months ago by chrchang523 11k
1
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0
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973
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Answer: Answer: Base-10 log transformed P-values and clump with plink v.1.9
22 months ago by chrchang523 11k
2
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0
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1.6k
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Comment: Comment: How to calculate kinship matrix table from vcf file
22 months ago by chrchang523 11k
1
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0
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714
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Answer: Answer: How do I restrict to only hm3 SNPs for plink analyses?
22 months ago by chrchang523 11k
0
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0
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1.1k
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Comment: Comment: PLINK not converting entire vcf to bed file
22 months ago by chrchang523 11k
0
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0
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1.6k
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Comment: Comment: Linkage Disequilibrium with Plink
23 months ago by chrchang523 11k
0
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1
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1.6k
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Answer: Answer: Linkage Disequilibrium with Plink
23 months ago by chrchang523 11k
2
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0
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3.0k
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Answer: Answer: KING kinship inference error
23 months ago by chrchang523 11k
1
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0
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1.0k
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Answer: Answer: Where do I get a large reference VCF?
23 months ago by chrchang523 11k
1
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1
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1.3k
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Comment: Comment: PLINK Error: Invalid QUAL value on line
24 months ago by chrchang523 11k
1
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1
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1.3k
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Answer: Answer: PLINK Error: Invalid QUAL value on line
24 months ago by chrchang523 11k
2
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0
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1.1k
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Answer: Answer: Calculate the kinship matrix from NGS data
2.0 years ago by chrchang523 11k
1
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0
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733
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Answer: Answer: invalid --hwe parameter sequence error when doing QC
2.1 years ago by chrchang523 11k
0
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0
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1.7k
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Answer: Answer: make BED file from existing BIM and FAM files
2.2 years ago by chrchang523 11k
0
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1
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3.0k
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Comment: Comment: PLINK2 selecting variants based on INFO score
2.2 years ago by chrchang523 11k
0
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1
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3.0k
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Comment: Comment: PLINK2 selecting variants based on INFO score
2.2 years ago by chrchang523 11k
0
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1
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3.0k
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Comment: Comment: PLINK2 selecting variants based on INFO score
2.2 years ago by chrchang523 11k
1
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1
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4.2k
views
Answer: Answer: VCF to Plink files
2.2 years ago by chrchang523 11k
2
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1
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1.1k
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Answer: Answer: drop duplicate insertion deletions in VCF at same position while keeping one
2.2 years ago by chrchang523 11k
0
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0
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2.4k
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Comment: Comment: High ref mismatch rate after liftOver from 23andme hg19 to hg38
2.2 years ago by chrchang523 11k
0
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1
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6.7k
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Comment: Comment: PLINK --geno and --mind
2.2 years ago by chrchang523 11k
0
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1
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6.7k
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Comment: Comment: PLINK --geno and --mind
2.2 years ago by chrchang523 11k
1
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1
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6.7k
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Answer: Answer: PLINK --geno and --mind
updated 2.2 years ago by 45k • written 2.2 years ago by 11k
1
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1
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1.8k
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Answer: Answer: How to correct the long variants ID error?
2.2 years ago by chrchang523 11k
0
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0
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1.7k
views
Comment: Comment: PCA projection with --score plink2.sscore output: what are the ALLELE_CT & NAMED
2.2 years ago by chrchang523 11k
1
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1
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1.7k
views
Comment: Comment: PCA projection with --score plink2.sscore output: what are the ALLELE_CT & NAMED
2.2 years ago by chrchang523 11k
1
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1
reply
10k
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Comment: Comment: Rust or C++, what to learn after Go for high-performance bioinformatics tools?
2.3 years ago by chrchang523 11k
0
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1
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10k
views
Comment: Comment: Rust or C++, what to learn after Go for high-performance bioinformatics tools?
2.3 years ago by chrchang523 11k
0
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0
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1.4k
views
Comment: Comment: Plink - running too slow.
2.4 years ago by chrchang523 11k
0
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1
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1.4k
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Comment: Comment: Plink - running too slow.
2.4 years ago by chrchang523 11k
1
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0
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2.5k
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Answer: Answer: How to measure pairwise genetic distance in all samples of a VCF file
2.4 years ago by chrchang523 11k
4
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2
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1.9k
views
Answer: Answer: long view SNPs in vcf file
2.4 years ago by chrchang523 11k
1
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0
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1.0k
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Answer: Answer: Calculate missing genotypes per sample with plink2
2.4 years ago by chrchang523 11k
0
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0
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2.3k
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Answer: Answer: PLINK1.9 Segmentation fault (core dumped)
2.4 years ago by chrchang523 11k
1
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0
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2.3k
views
Comment: Comment: PLINK1.9 Segmentation fault (core dumped)
2.4 years ago by chrchang523 11k
2
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0
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31k
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Comment: Comment: Best way to query VCF for specific variants
2.5 years ago by chrchang523 11k
0
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0
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639
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Comment: Comment: GWAS with x and y chrosome files plink2
2.5 years ago by chrchang523 11k
2
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2
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2.0k
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Answer: Answer: PLINK p value returning NA
2.5 years ago by chrchang523 11k
1
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1
reply
3.9k
views
Comment: Comment: Error in converting vcf file to plink format
2.5 years ago by chrchang523 11k
2
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1
reply
2.7k
views
Comment: Comment: PLINK - individual variance with the SNPs weights
2.5 years ago by chrchang523 11k
1
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1
reply
2.7k
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Comment: Comment: PLINK - individual variance with the SNPs weights
2.5 years ago by chrchang523 11k
0
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1
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2.7k
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Comment: Comment: PLINK - individual variance with the SNPs weights
2.6 years ago by chrchang523 11k
0
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0
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1.8k
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Comment: Comment: plink logistic regression error
2.6 years ago by chrchang523 11k
1
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1
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1.8k
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Comment: Comment: plink logistic regression error
2.6 years ago by chrchang523 11k
0
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1
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1.8k
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Comment: Comment: plink logistic regression error
2.6 years ago by chrchang523 11k
2
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0
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1.2k
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Answer: Answer: Better splitting of mutliallelic sites then bcftools norm --m-any
2.6 years ago by chrchang523 11k
0
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1
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1.2k
views
Answer: Answer: plink2 fails to calculate allele frequency
2.6 years ago by chrchang523 11k
1
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1
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1.9k
views
Comment: Comment: SNP array plink to VCF validation issue
2.6 years ago by chrchang523 11k
0
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1
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1.9k
views
Comment: Comment: SNP array plink to VCF validation issue
2.6 years ago by chrchang523 11k
913 results • Page 2 of 19
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