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2.8k
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Answer: Answer: High proportion of non-biallelic SNPs in dbSNP 155 vs 144
2.3 years ago by chrchang523 11k
1
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3.8k
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Answer: Answer: set-all-var-ids misuse in plink 2.0
2.3 years ago by chrchang523 11k
2
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2
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1.3k
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Answer: Answer: Changing from "rs" to "chr_pos_ref_alt"
2.3 years ago by chrchang523 11k
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0
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1.9k
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Comment: Comment: Plink: .vcf to .ped issue (problem with polyploidy?)
2.3 years ago by chrchang523 11k
2
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1
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778
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Answer: Answer: PRS with multiple panels of SNP weights
2.3 years ago by chrchang523 11k
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1
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1.6k
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Comment: Comment: updating .bim with new rsids
2.3 years ago by chrchang523 11k
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0
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1.6k
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Comment: Comment: updating .bim with new rsids
2.3 years ago by chrchang523 11k
1
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1
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1.6k
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Answer: Answer: updating .bim with new rsids
2.4 years ago by chrchang523 11k
4
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0
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4.7k
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Answer: Answer: plink2 cannot make bed file
2.4 years ago by chrchang523 11k
1
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863
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Answer: Answer: plink update .bim question
2.4 years ago by chrchang523 11k
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0
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720
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Comment: Comment: Plink (1.07 and 1.09) runs and stops after reading map
2.4 years ago by chrchang523 11k
1
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1
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957
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Answer: Answer: How can I keep INFO value when convert bgen to VCF by using plink2?
2.4 years ago by chrchang523 11k
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0
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4.0k
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Comment: Comment: Computing allele frequencies per individual for a set of SNPs in PLINK
2.4 years ago by chrchang523 11k
0
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1
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4.0k
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Comment: Comment: Computing allele frequencies per individual for a set of SNPs in PLINK
2.4 years ago by chrchang523 11k
0
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1
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4.0k
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Comment: Comment: Computing allele frequencies per individual for a set of SNPs in PLINK
2.4 years ago by chrchang523 11k
1
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0
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942
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Comment: Comment: Coded allele for plink --r command
2.4 years ago by chrchang523 11k
2
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1
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1.2k
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Answer: Answer: Plink runtime when using "--extract"
2.4 years ago by chrchang523 11k
1
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1
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942
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Answer: Answer: Coded allele for plink --r command
2.4 years ago by chrchang523 11k
2
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0
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1.1k
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Answer: Answer: Help with allele flip in plink
2.4 years ago by chrchang523 11k
0
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0
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1.0k
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Comment: Comment: How to convert from csv to ped and map files?
2.4 years ago by chrchang523 11k
1
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0
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2.8k
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Comment: Comment: How to merge 20K single-sample VCFs *without* using plink or plink2?
2.5 years ago by chrchang523 11k
0
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1
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2.8k
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Comment: Comment: How to merge 20K single-sample VCFs *without* using plink or plink2?
2.5 years ago by chrchang523 11k
1
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1
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2.8k
views
Comment: Comment: How to merge 20K single-sample VCFs *without* using plink or plink2?
2.5 years ago by chrchang523 11k
2
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1
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2.8k
views
Comment: Comment: How to merge 20K single-sample VCFs *without* using plink or plink2?
2.5 years ago by chrchang523 11k
2
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0
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795
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Answer: Answer: Package for PCA on post-imputation dosage genotype data for GWAS (minimac/Michig
2.5 years ago by chrchang523 11k
2
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0
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986
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Answer: Answer: How to delete Duplicate snps in plink 1.9
2.5 years ago by chrchang523 11k
2
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0
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1.4k
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Answer: Answer: Bcftools equivalent of vcftools conversion to ped & map
2.5 years ago by chrchang523 11k
1
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1
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2.5k
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Comment: Comment: plink bim file stops at chrM
2.5 years ago by chrchang523 11k
1
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1
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2.5k
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Comment: Comment: plink bim file stops at chrM
2.5 years ago by chrchang523 11k
3
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0
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7.7k
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Answer: Answer: How to determine percentage missing genotypes in VCF/BCF?
2.5 years ago by chrchang523 11k
0
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1
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2.5k
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Comment: Comment: plink bim file stops at chrM
2.5 years ago by chrchang523 11k
0
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1
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2.5k
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Answer: Answer: plink bim file stops at chrM
2.5 years ago by chrchang523 11k
1
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0
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819
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Answer: Answer: Plink v1.9: Order of SNPs when extracting from file
2.5 years ago by chrchang523 11k
1
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0
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4.1k
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Comment: Comment: How to generate plink map files
2.6 years ago by chrchang523 11k
0
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1
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1.2k
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Answer: Answer: Adding additional covariates to plink logistic regression model on HLA returns p
2.6 years ago by chrchang523 11k
1
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0
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1.9k
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Comment: Comment: Plink: .vcf to .ped issue (problem with polyploidy?)
2.6 years ago by chrchang523 11k
2
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0
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699
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Answer: Answer: Accessing TopMed or 1000g ancestry data (GRCh38)
2.6 years ago by chrchang523 11k
0
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0
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964
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Comment: Comment: How to preserve alleles across plink operations?
2.6 years ago by chrchang523 11k
0
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1
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964
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Answer: Answer: How to preserve alleles across plink operations?
2.6 years ago by chrchang523 11k
0
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0
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616
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Answer: Answer: Additive and dominance components for .ped file
2.6 years ago by chrchang523 11k
2
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0
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1.1k
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Answer: Answer: where to find GRCh38 for 1000 Genomes
2.6 years ago by chrchang523 11k
0
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0
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6.3k
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Comment: Comment: relationship between PI_HAT and --king-cutoff coefficient?
2.6 years ago by chrchang523 11k
0
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0
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719
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Answer: Answer: Removing specific line number in Plink Map/Ped files
2.6 years ago by chrchang523 11k
0
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0
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1.9k
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Comment: Comment: Converting PLINK files to VCF
2.6 years ago by chrchang523 11k
0
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1
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1.9k
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Comment: Comment: Converting PLINK files to VCF
2.6 years ago by chrchang523 11k
0
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0
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15k
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Comment: Comment: plink2 bgen to vcf ukbiobank
2.6 years ago by chrchang523 11k
0
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1
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4.0k
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Comment: Comment: Computing allele frequencies per individual for a set of SNPs in PLINK
2.7 years ago by chrchang523 11k
2
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0
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1.3k
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Answer: Answer: How to input multiple bed files in plink
2.7 years ago by chrchang523 11k
0
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0
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717
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Comment: Comment: Merge only bim files with plink
2.7 years ago by chrchang523 11k
0
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0
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4.0k
views
Comment: Comment: Computing allele frequencies per individual for a set of SNPs in PLINK
2.7 years ago by chrchang523 11k
907 results • Page 3 of 19
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