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Comment: Comment: Open question: What's the best way to share an R environement?
5 months ago by Ondina ▴ 100
6
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3
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374
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Open question: What's the best way to share an R environement?
R environement conda reproductibility
updated 5 months ago by 86k • written 5 months ago by ▴ 100
0
votes
0
replies
283
views
Mutual information method for gene markers identification ???
scRNA-seq mutual-information
updated 11 months ago by 44k • written 11 months ago by ▴ 100
0
votes
1
reply
796
views
PyMOL: how to list all selection names?
pymol
updated 15 months ago by ★ 2.1k • written 15 months ago by ▴ 100
0
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0
replies
4.0k
views
Comment: Comment: Set up label.color with the same colors as the cluster colors in Seurat DimPlot(
17 months ago by Ondina ▴ 100
6
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7
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4.0k
views
Set up label.color with the same colors as the cluster colors in Seurat DimPlot() ?
seurat scRNA-seq
17 months ago by Ondina ▴ 100
1
vote
0
replies
4.0k
views
Comment: Comment: Set up label.color with the same colors as the cluster colors in Seurat DimPlot(
17 months ago by Ondina ▴ 100
0
votes
1
reply
4.0k
views
Comment: Comment: Set up label.color with the same colors as the cluster colors in Seurat DimPlot(
17 months ago by Ondina ▴ 100
1
vote
0
replies
981
views
Comment: Comment: Samtools sort error: [pretty_header] invalid header
18 months ago by Ondina ▴ 100
1
vote
1
reply
981
views
Comment: Comment: Samtools sort error: [pretty_header] invalid header
18 months ago by Ondina ▴ 100
0
votes
1
reply
981
views
Comment: Comment: Samtools sort error: [pretty_header] invalid header
18 months ago by Ondina ▴ 100
4
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5
replies
981
views
Samtools sort error: [pretty_header] invalid header
sam RNA-seq bam samtools
updated 18 months ago by 44k • written 18 months ago by ▴ 100
1
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0
replies
820
views
Answer: Answer: MatrisomeDB down?
23 months ago by Ondina ▴ 100
0
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1
reply
820
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Comment: Comment: MatrisomeDB down?
23 months ago by Ondina ▴ 100
3
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4
replies
820
views
MatrisomeDB down?
matrisome database
updated 23 months ago by 148k • written 23 months ago by ▴ 100
2
votes
1
reply
999
views
Best method for small cluster (<100 cells) differential expression analysis in single-cell analysis
differential single-cell seurat expression
2.0 years ago by Ondina ▴ 100
0
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0
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2.9k
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Comment: Comment: Searching for a way to plot Seurat style equivalent dotplot for gene expression
2.1 years ago by Ondina ▴ 100
0
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0
replies
2.9k
views
Comment: Comment: Searching for a way to plot Seurat style equivalent dotplot for gene expression
2.1 years ago by Ondina ▴ 100
5
votes
5
replies
2.9k
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Searching for a way to plot Seurat style equivalent dotplot for gene expression with DESeq on RNA-seq data
dotplot DESeq rna-seq visualisation
2.1 years ago by Ondina ▴ 100
12
votes
5
replies
2.9k
views
scRNA-seq: Which is the best method for computing the % of similarity between two clusters using R?
RNAseq singlecell clustering
updated 2.3 years ago by ▴ 800 • written 2.9 years ago by ▴ 100
0
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0
replies
711
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Comment: Comment: GEO Query error
2.4 years ago by Ondina ▴ 100
2
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2
replies
711
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GEO Query error
GEOQuery
2.4 years ago by Ondina ▴ 100
4
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2
replies
1.6k
views
Is there a way to easily export a .mtx file from a seurat object and use it in the scNetViz app for Cytoscape?
conversion cytoscape singlecell format seurat
updated 2.5 years ago by ▴ 620 • written 2.5 years ago by ▴ 100
0
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0
replies
688
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Comment: Comment: getting a job only with masters degree
2.8 years ago by Ondina ▴ 100
0
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0
replies
2.9k
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Comment: Comment: scRNA-seq: Which is the best method for computing the % of similarity between tw
2.9 years ago by Ondina ▴ 100
0
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0
replies
6.4k
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Comment: Comment: How to compare two Seurat object (sample) in order to find top markers?
3.0 years ago by Ondina ▴ 100
2
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1
reply
6.4k
views
Answer: Answer: How to compare two Seurat object (sample) in order to find top markers?
3.1 years ago by Ondina ▴ 100
2
votes
2
replies
1.3k
views
Volcano 3D plot on single cell seurat data ?
single-cell volcano3d seurat
3.1 years ago by Ondina ▴ 100
1
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0
replies
1.3k
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Answer: Answer: Volcano 3D plot on single cell seurat data ?
3.1 years ago by Ondina ▴ 100
0
votes
0
replies
1.8k
views
Comment: Comment: cellranger count help
3.2 years ago by Ondina ▴ 100
3
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4
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3.6k
views
Searching expression for one particular gene in Seurat object issue (Seurat, R)
Seurat scRNA-seq R
updated 3.3 years ago by ★ 18k • written 3.3 years ago by ▴ 100
0
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1
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3.6k
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Comment: Comment: Searching expression for one particular gene in Seurat object issue (Seurat, R)
3.3 years ago by Ondina ▴ 100
0
votes
0
replies
23k
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Comment: Comment: subsetting out cells from seurat object based on expression of 1 gene
3.3 years ago by Ondina ▴ 100
0
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1
reply
23k
views
Comment: Comment: subsetting out cells from seurat object based on expression of 1 gene
3.3 years ago by Ondina ▴ 100
0
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0
replies
3.1k
views
Comment: Comment: Filter DGElist object: keep only genes expressed in sample at the same time as a
3.3 years ago by Ondina ▴ 100
0
votes
1
reply
3.1k
views
Comment: Comment: Filter DGElist object: keep only genes expressed in sample at the same time as a
3.3 years ago by Ondina ▴ 100
0
votes
0
replies
3.1k
views
Comment: Comment: Filter DGElist object: keep only genes expressed in sample at the same time as a
3.3 years ago by Ondina ▴ 100
0
votes
1
reply
3.1k
views
Comment: Comment: Filter DGElist object: keep only genes expressed in sample at the same time as a
3.3 years ago by Ondina ▴ 100
0
votes
1
reply
3.1k
views
Comment: Comment: Filter DGElist object: keep only genes expressed in sample at the same time as a
updated 3.3 years ago by 148k • written 3.3 years ago by ▴ 100
3
votes
9
replies
3.1k
views
Filter DGElist object: keep only genes expressed in sample at the same time as a particular gene of interest
edger RNA-seq dgelist R
3.3 years ago by Ondina ▴ 100
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