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836
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How to compare two datasets of proteomic analysis when there are unique and common proteins?
proteomics mass spectrometry protein replication
4.3 years ago by Farah ▴ 80
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0
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2.9k
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Comment: C: How to deal with the issue when STRING database could not find a protein, or ins
4.3 years ago by Farah ▴ 80
2
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2
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2.9k
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How to deal with the issue when STRING database could not find a protein, or instead matched its similar protein?
proteomics STRING interaction network uniprot
updated 4.3 years ago by ▴ 80 • written 4.3 years ago by ▴ 80
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0
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2.3k
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Comment: C: How to write it in R language?
4.3 years ago by Farah ▴ 80
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0
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2.3k
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Comment: C: How to write it in R language?
4.3 years ago by Farah ▴ 80
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1
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2.3k
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Comment: C: How to write it in R language?
4.4 years ago by Farah ▴ 80
0
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1
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2.3k
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Comment: C: How to write it in R language?
4.4 years ago by Farah ▴ 80
4
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11
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2.3k
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How to write it in R language?
R function programming coding
updated 4.4 years ago by ▴ 150 • written 4.4 years ago by ▴ 80
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0
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2.3k
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Comment: C: How to write it in R language?
4.4 years ago by Farah ▴ 80
0
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0
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1.4k
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What is the criteria for defining a CRAPome cut-off score for filtering proteomics datasets?
crapome proteomics filtering cut-off score
4.4 years ago by Farah ▴ 80
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0
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664
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What is the number of spectra in a mass spectrometry dataset containing list of proteins?
proteomics Mass spectrometry spectra MS spectra
4.4 years ago by Farah ▴ 80
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1
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1.4k
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What is the most efficient way of discovering bait-prey interaction networks and mapping biological process relationships within a network?
cytoscape proteomics interaction networks ClueGO
updated 4.5 years ago by ▴ 650 • written 4.5 years ago by ▴ 80
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1
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2.5k
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Which tool for clustering (sub-networking) of protein-protein interaction networks based on the Gene Ontology Biological Process of proteins?
cytoscape clustering Gene Ontology sub-network
updated 4.5 years ago by ▴ 650 • written 4.5 years ago by ▴ 80
4
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4
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2.3k
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Ensemble of Gene Set Enrichment Analyses (EGSEA) for count matrix generated by DESeq2 and edgeR packages
RNA-Seq EGSEA GSEA DESeq2 edgeR
updated 5.3 years ago by 20 • written 5.8 years ago by ▴ 80
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0
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983
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Comment: C: How to detect novel proteins and non-annotated proteins from a list of MS protei
5.4 years ago by Farah ▴ 80
0
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2
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983
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How to detect novel proteins and non-annotated proteins from a list of MS proteins?
mass spectrometry proteomics novel proteins
5.4 years ago by Farah ▴ 80
1
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0
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2.1k
views
How to modify bin interval and bars colour in a bar polar chart created by plotly package in R?
plotly R bar_polar_chart Radial_histogram
5.4 years ago by Farah ▴ 80
0
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0
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1.8k
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Comment: C: How to modify the nodes features in Gradient1 style in Cytoscape?
5.5 years ago by Farah ▴ 80
0
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0
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1.4k
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How to make a quarter circle polar plot using ggplot2?
ggplot2 coord_polar R quarter-circle-polar-plot
5.5 years ago by Farah ▴ 80
2
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2
replies
1.8k
views
How to modify the nodes features in Gradient1 style in Cytoscape?
Cytoscape String 3D Gradient1
updated 5.5 years ago by ▴ 580 • written 5.6 years ago by ▴ 80
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0
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1.9k
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Comment: C: How to interpret a Stringdb interaction network of a mouse-proteomics dataset wh
5.6 years ago by Farah ▴ 80
1
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2
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1.9k
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How to interpret a Stringdb interaction network of a mouse-proteomics dataset when it is detected only in Homo sapiens organism?
Stringdb interaction proteomics network String
updated 5.6 years ago by 6.6k • written 5.6 years ago by ▴ 80
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0
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5.5k
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Comment: C: Graphical presentation of STRING protein-protein network and gene ontology
5.6 years ago by Farah ▴ 80
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0
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9.1k
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Comment: C: DAVID functional Analysis and its visualization of GO terms using Bar plot
5.6 years ago by Farah ▴ 80
0
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1
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9.1k
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Comment: C: DAVID functional Analysis and its visualization of GO terms using Bar plot
5.6 years ago by Farah ▴ 80
0
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1
reply
9.1k
views
Comment: C: DAVID functional Analysis and its visualization of GO terms using Bar plot
updated 5.6 years ago by 89k • written 5.6 years ago by ▴ 80
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0
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9.1k
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Comment: C: DAVID functional Analysis and its visualization of GO terms using Bar plot
5.6 years ago by Farah ▴ 80
0
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1
reply
9.1k
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Comment: C: DAVID functional Analysis and its visualization of GO terms using Bar plot
5.6 years ago by Farah ▴ 80
0
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0
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5.5k
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Comment: C: Graphical presentation of STRING protein-protein network and gene ontology
5.6 years ago by Farah ▴ 80
0
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1
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9.1k
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Comment: C: DAVID functional Analysis and its visualization of GO terms using Bar plot
5.6 years ago by Farah ▴ 80
12
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7
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5.5k
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Graphical presentation of STRING protein-protein network and gene ontology
STRING DAVID gene-ontology interaction-network
updated 5.6 years ago by ★ 1.3k • written 5.6 years ago by ▴ 80
0
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0
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5.5k
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Comment: C: Graphical presentation of STRING protein-protein network and gene ontology
5.6 years ago by Farah ▴ 80
2
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1
reply
1.2k
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protein-protein interaction network
String network interaction
5.6 years ago by Farah ▴ 80
0
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0
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5.5k
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Comment: C: Graphical presentation of STRING protein-protein network and gene ontology
5.6 years ago by Farah ▴ 80
0
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1
reply
18k
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Comment: C: Confusion about FindMarkers(), FindVariableFeatures(), RunTSNE(), and RunUMAP()
5.6 years ago by Farah ▴ 80
17
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8
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18k
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Confusion about FindMarkers(), FindVariableFeatures(), RunTSNE(), and RunUMAP() in seurat package
scRNA-seq kallisto Seurat bustools
updated 2.3 years ago by 45k • written 5.6 years ago by ▴ 80
0
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0
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4.7k
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Comment: C: How to make a loop to run kallisto bus command for so many fastq.gz files at onc
5.7 years ago by Farah ▴ 80
0
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1
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4.7k
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Comment: C: How to make a loop to run kallisto bus command for so many fastq.gz files at onc
5.7 years ago by Farah ▴ 80
0
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1
reply
4.7k
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Comment: C: How to make a loop to run kallisto bus command for so many fastq.gz files at onc
5.7 years ago by Farah ▴ 80
0
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1
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4.7k
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Comment: C: How to make a loop to run kallisto bus command for so many fastq.gz files at onc
5.7 years ago by Farah ▴ 80
2
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8
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4.7k
views
How to make a loop to run kallisto bus command for so many fastq.gz files at once?
bash kallisto bustools
updated 2.3 years ago by 45k • written 5.7 years ago by ▴ 80
0
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0
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4.5k
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Comment: C: How to install bamtofastq utility in my terminal?
5.7 years ago by Farah ▴ 80
0
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1
reply
4.5k
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Comment: C: How to install bamtofastq utility in my terminal?
5.7 years ago by Farah ▴ 80
0
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1
reply
4.5k
views
Comment: C: How to install bamtofastq utility in my terminal?
5.7 years ago by Farah ▴ 80
3
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6
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4.5k
views
How to install bamtofastq utility in my terminal?
kallisto bamtofastq bustools
updated 2.3 years ago by 45k • written 5.7 years ago by ▴ 80
0
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0
replies
1.7k
views
Comment: C: Is "Attribute Circle Layout" of a protein-protein network standard and acceptabl
5.7 years ago by Farah ▴ 80
3
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6
replies
1.7k
views
Is "Attribute Circle Layout" of a protein-protein network standard and acceptable for a good publication?
cytoscape network interaction
updated 5.7 years ago by ▴ 650 • written 5.8 years ago by ▴ 80
0
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0
replies
3.0k
views
Comment: C: Kallisto | bustools workflow for fastq with R1 and R2 (forward and reverse)?
5.7 years ago by Farah ▴ 80
1
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7
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3.0k
views
Kallisto | bustools workflow for fastq with R1 and R2 (forward and reverse)?
scRNA-seq Kallisto bustools
updated 2.3 years ago by 45k • written 5.7 years ago by ▴ 80
0
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1
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3.0k
views
Comment: C: How to use Kallisto | bustools workflow for fastq files where each sample has tw
5.7 years ago by Farah ▴ 80
103 results • Page 1 of 3
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