Profile Posts Awards
Show
all questions tools blogs news tutorials forum answers comments
0
votes
0
replies
786
views
How to compare two datasets of proteomic analysis when there are unique and common proteins?
proteomics mass spectrometry protein replication
4.0 years ago by Farah ▴ 80
0
votes
0
replies
2.3k
views
Comment: C: How to deal with the issue when STRING database could not find a protein, or ins
4.0 years ago by Farah ▴ 80
2
votes
2
replies
2.3k
views
How to deal with the issue when STRING database could not find a protein, or instead matched its similar protein?
proteomics STRING interaction network uniprot
updated 4.0 years ago by ▴ 80 • written 4.0 years ago by ▴ 80
0
votes
0
replies
1.9k
views
Comment: C: How to write it in R language?
4.0 years ago by Farah ▴ 80
0
votes
0
replies
1.9k
views
Comment: C: How to write it in R language?
4.0 years ago by Farah ▴ 80
0
votes
1
reply
1.9k
views
Comment: C: How to write it in R language?
4.0 years ago by Farah ▴ 80
0
votes
1
reply
1.9k
views
Comment: C: How to write it in R language?
4.0 years ago by Farah ▴ 80
4
votes
11
replies
1.9k
views
How to write it in R language?
R function programming coding
updated 4.0 years ago by ▴ 150 • written 4.0 years ago by ▴ 80
0
votes
0
replies
1.9k
views
Comment: C: How to write it in R language?
4.0 years ago by Farah ▴ 80
0
votes
0
replies
1.3k
views
What is the criteria for defining a CRAPome cut-off score for filtering proteomics datasets?
crapome proteomics filtering cut-off score
4.0 years ago by Farah ▴ 80
0
votes
0
replies
623
views
What is the number of spectra in a mass spectrometry dataset containing list of proteins?
proteomics Mass spectrometry spectra MS spectra
4.1 years ago by Farah ▴ 80
0
votes
1
reply
1.3k
views
What is the most efficient way of discovering bait-prey interaction networks and mapping biological process relationships within a network?
cytoscape proteomics interaction networks ClueGO
updated 4.2 years ago by ▴ 620 • written 4.2 years ago by ▴ 80
1
vote
1
reply
2.4k
views
Which tool for clustering (sub-networking) of protein-protein interaction networks based on the Gene Ontology Biological Process of proteins?
cytoscape clustering Gene Ontology sub-network
updated 4.2 years ago by ▴ 620 • written 4.2 years ago by ▴ 80
4
votes
4
replies
2.1k
views
Ensemble of Gene Set Enrichment Analyses (EGSEA) for count matrix generated by DESeq2 and edgeR packages
RNA-Seq EGSEA GSEA DESeq2 edgeR
updated 5.0 years ago by 20 • written 5.5 years ago by ▴ 80
0
votes
0
replies
912
views
Comment: C: How to detect novel proteins and non-annotated proteins from a list of MS protei
5.1 years ago by Farah ▴ 80
0
votes
2
replies
912
views
How to detect novel proteins and non-annotated proteins from a list of MS proteins?
mass spectrometry proteomics novel proteins
5.1 years ago by Farah ▴ 80
1
vote
0
replies
2.1k
views
How to modify bin interval and bars colour in a bar polar chart created by plotly package in R?
plotly R bar_polar_chart Radial_histogram
5.1 years ago by Farah ▴ 80
0
votes
0
replies
1.6k
views
Comment: C: How to modify the nodes features in Gradient1 style in Cytoscape?
5.2 years ago by Farah ▴ 80
0
votes
0
replies
1.3k
views
How to make a quarter circle polar plot using ggplot2?
ggplot2 coord_polar R quarter-circle-polar-plot
5.2 years ago by Farah ▴ 80
2
votes
2
replies
1.6k
views
How to modify the nodes features in Gradient1 style in Cytoscape?
Cytoscape String 3D Gradient1
updated 5.2 years ago by ▴ 580 • written 5.2 years ago by ▴ 80
0
votes
0
replies
1.6k
views
Comment: C: How to interpret a Stringdb interaction network of a mouse-proteomics dataset wh
5.2 years ago by Farah ▴ 80
1
vote
2
replies
1.6k
views
How to interpret a Stringdb interaction network of a mouse-proteomics dataset when it is detected only in Homo sapiens organism?
Stringdb interaction proteomics network String
updated 5.2 years ago by 6.6k • written 5.2 years ago by ▴ 80
0
votes
0
replies
5.0k
views
Comment: C: Graphical presentation of STRING protein-protein network and gene ontology
5.2 years ago by Farah ▴ 80
0
votes
0
replies
8.7k
views
Comment: C: DAVID functional Analysis and its visualization of GO terms using Bar plot
5.3 years ago by Farah ▴ 80
0
votes
1
reply
8.7k
views
Comment: C: DAVID functional Analysis and its visualization of GO terms using Bar plot
5.3 years ago by Farah ▴ 80
0
votes
1
reply
8.7k
views
Comment: C: DAVID functional Analysis and its visualization of GO terms using Bar plot
updated 5.3 years ago by 89k • written 5.3 years ago by ▴ 80
0
votes
0
replies
8.7k
views
Comment: C: DAVID functional Analysis and its visualization of GO terms using Bar plot
5.3 years ago by Farah ▴ 80
0
votes
1
reply
8.7k
views
Comment: C: DAVID functional Analysis and its visualization of GO terms using Bar plot
5.3 years ago by Farah ▴ 80
0
votes
0
replies
5.0k
views
Comment: C: Graphical presentation of STRING protein-protein network and gene ontology
5.3 years ago by Farah ▴ 80
0
votes
1
reply
8.7k
views
Comment: C: DAVID functional Analysis and its visualization of GO terms using Bar plot
5.3 years ago by Farah ▴ 80
12
votes
7
replies
5.0k
views
Graphical presentation of STRING protein-protein network and gene ontology
STRING DAVID gene-ontology interaction-network
updated 5.3 years ago by ★ 1.3k • written 5.3 years ago by ▴ 80
0
votes
0
replies
5.0k
views
Comment: C: Graphical presentation of STRING protein-protein network and gene ontology
5.3 years ago by Farah ▴ 80
2
votes
1
reply
1.0k
views
protein-protein interaction network
String network interaction
5.3 years ago by Farah ▴ 80
0
votes
0
replies
5.0k
views
Comment: C: Graphical presentation of STRING protein-protein network and gene ontology
5.3 years ago by Farah ▴ 80
0
votes
1
reply
16k
views
Comment: C: Confusion about FindMarkers(), FindVariableFeatures(), RunTSNE(), and RunUMAP()
5.3 years ago by Farah ▴ 80
17
votes
8
replies
16k
views
Confusion about FindMarkers(), FindVariableFeatures(), RunTSNE(), and RunUMAP() in seurat package
scRNA-seq kallisto Seurat bustools
updated 23 months ago by 44k • written 5.3 years ago by ▴ 80
0
votes
0
replies
4.4k
views
Comment: C: How to make a loop to run kallisto bus command for so many fastq.gz files at onc
5.3 years ago by Farah ▴ 80
0
votes
1
reply
4.4k
views
Comment: C: How to make a loop to run kallisto bus command for so many fastq.gz files at onc
5.3 years ago by Farah ▴ 80
0
votes
1
reply
4.4k
views
Comment: C: How to make a loop to run kallisto bus command for so many fastq.gz files at onc
5.3 years ago by Farah ▴ 80
0
votes
1
reply
4.4k
views
Comment: C: How to make a loop to run kallisto bus command for so many fastq.gz files at onc
5.3 years ago by Farah ▴ 80
2
votes
8
replies
4.4k
views
How to make a loop to run kallisto bus command for so many fastq.gz files at once?
bash kallisto bustools
updated 23 months ago by 44k • written 5.3 years ago by ▴ 80
0
votes
0
replies
4.3k
views
Comment: C: How to install bamtofastq utility in my terminal?
5.3 years ago by Farah ▴ 80
0
votes
1
reply
4.3k
views
Comment: C: How to install bamtofastq utility in my terminal?
5.4 years ago by Farah ▴ 80
0
votes
1
reply
4.3k
views
Comment: C: How to install bamtofastq utility in my terminal?
5.4 years ago by Farah ▴ 80
3
votes
6
replies
4.3k
views
How to install bamtofastq utility in my terminal?
kallisto bamtofastq bustools
updated 23 months ago by 44k • written 5.4 years ago by ▴ 80
0
votes
0
replies
1.5k
views
Comment: C: Is "Attribute Circle Layout" of a protein-protein network standard and acceptabl
5.4 years ago by Farah ▴ 80
3
votes
6
replies
1.5k
views
Is "Attribute Circle Layout" of a protein-protein network standard and acceptable for a good publication?
cytoscape network interaction
updated 5.4 years ago by ▴ 620 • written 5.4 years ago by ▴ 80
0
votes
0
replies
2.8k
views
Comment: C: Kallisto | bustools workflow for fastq with R1 and R2 (forward and reverse)?
5.4 years ago by Farah ▴ 80
1
vote
7
replies
2.8k
views
Kallisto | bustools workflow for fastq with R1 and R2 (forward and reverse)?
scRNA-seq Kallisto bustools
updated 23 months ago by 44k • written 5.4 years ago by ▴ 80
0
votes
1
reply
2.8k
views
Comment: C: How to use Kallisto | bustools workflow for fastq files where each sample has tw
5.4 years ago by Farah ▴ 80
103 results • Page 1 of 3
Content Search
Users
Tags
Badges
Help About
FAQ
Access RSS
API
Stats

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.

Powered by the version 2.3.6