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Comment: Comment: quality control scRNAseq
8 months ago by jv ★ 1.8k
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543
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Answer: Answer: quality control scRNAseq
8 months ago by jv ★ 1.8k
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626
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Comment: Comment: Is it feasible to merge Illumina RNA-Seq data with varying read lengths?
8 months ago by jv ★ 1.8k
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597
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Comment: Comment: Re. Batch effect correction in data with a design matrix without full rank
8 months ago by jv ★ 1.8k
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Job: Data scientist/Bioinformatician University of Wisconsin Biotechnology Center Bioinformatics Resource Center
data-scientist
updated 8 months ago by 44k • written 8 months ago by ★ 1.8k
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621
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Comment: Comment: Can I perform a Functional Enrichment Analysis on a specific list of pre-defined
8 months ago by jv ★ 1.8k
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451
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Comment: Comment: WGCNA for co-expression network analysis
8 months ago by jv ★ 1.8k
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1.4k
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Comment: Comment: Difference between GLM and Wilcoxon rank sum test
8 months ago by jv ★ 1.8k
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596
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Comment: Comment: How to normalise RNA seq data from two independent experiments to the same scale
8 months ago by jv ★ 1.8k
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633
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Answer: Answer: Single cell rna sequencing analysis using R help
8 months ago by jv ★ 1.8k
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633
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Comment: Comment: Single cell rna sequencing analysis using R help
8 months ago by jv ★ 1.8k
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596
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Comment: Comment: How to normalise RNA seq data from two independent experiments to the same scale
8 months ago by jv ★ 1.8k
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1
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596
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Comment: Comment: How to normalise RNA seq data from two independent experiments to the same scale
8 months ago by jv ★ 1.8k
0
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1
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1.4k
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Comment: Comment: Difference between GLM and Wilcoxon rank sum test
8 months ago by jv ★ 1.8k
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0
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1.6k
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Answer: Answer: Filter out doublet and Clustering
8 months ago by jv ★ 1.8k
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597
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Comment: Comment: Choosing right GSEA background gene sets
8 months ago by jv ★ 1.8k
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513
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Comment: Comment: Deseq2 shows differential expression while TPM values are not significantly diff
8 months ago by jv ★ 1.8k
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422
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Comment: Comment: Orthomcl Pairs
9 months ago by jv ★ 1.8k
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519
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Comment: Comment: WGCNA from Salmon Output
9 months ago by jv ★ 1.8k
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519
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Comment: Comment: WGCNA from Salmon Output
9 months ago by jv ★ 1.8k
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580
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Comment: Comment: Limma - normalizing gene expression data from multiple SRA experiments
9 months ago by jv ★ 1.8k
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1
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580
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Comment: Comment: Limma - normalizing gene expression data from multiple SRA experiments
9 months ago by jv ★ 1.8k
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746
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Comment: Comment: How do I get utr transcript coordinates?
9 months ago by jv ★ 1.8k
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501
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Comment: Comment: Getting less DE genes when incorporating all samples
9 months ago by jv ★ 1.8k
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975
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Comment: Comment: GO and KEGG
9 months ago by jv ★ 1.8k
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724
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Comment: Comment: Why am I receiving an error with RUVg in RUVseq
9 months ago by jv ★ 1.8k
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799
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Comment: Comment: Illumina NextSeq 500 Read Length
9 months ago by jv ★ 1.8k
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631
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Comment: Comment: Normalization of combined normal and tumor tissue samples from GTEx and TCGA pri
9 months ago by jv ★ 1.8k
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0
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631
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Comment: Comment: Normalization of combined normal and tumor tissue samples from GTEx and TCGA pri
9 months ago by jv ★ 1.8k
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0
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680
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Answer: Answer: Significance of P value in GSEA
9 months ago by jv ★ 1.8k
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1.0k
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Answer: Answer: How to get raw mRNA count from Seurat converted anndata
9 months ago by jv ★ 1.8k
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0
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975
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Comment: Comment: GO and KEGG
9 months ago by jv ★ 1.8k
0
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1
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975
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Comment: Comment: GO and KEGG
9 months ago by jv ★ 1.8k
2
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1
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799
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Comment: Comment: Illumina NextSeq 500 Read Length
9 months ago by jv ★ 1.8k
1
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0
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366
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Comment: Comment: Retrieving gene expression from tabula muris in R
9 months ago by jv ★ 1.8k
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0
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971
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Comment: Comment: Trouble Understanding DESeq2 Design Formula ("Model Matrix is not Full Rank")
9 months ago by jv ★ 1.8k
1
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2
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971
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Comment: Comment: Trouble Understanding DESeq2 Design Formula ("Model Matrix is not Full Rank")
9 months ago by jv ★ 1.8k
1
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0
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633
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Answer: Answer: Need a spatial transcriptomics cancer data
9 months ago by jv ★ 1.8k
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0
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586
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Answer: Answer: GTEx TPMs Vs normalized data
9 months ago by jv ★ 1.8k
2
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1
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975
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Answer: Answer: GO and KEGG
9 months ago by jv ★ 1.8k
0
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1
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586
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Comment: Comment: GTEx TPMs Vs normalized data
9 months ago by jv ★ 1.8k
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0
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368
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Answer: Answer: GEO database
9 months ago by jv ★ 1.8k
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261
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scRNA-seq atlas differential pathway activation
scRNA-seq
9 months ago by jv ★ 1.8k
2
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0
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592
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Answer: Answer: Get the gene functions specific for clusters (RNA seq)
9 months ago by jv ★ 1.8k
2
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1
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796
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Comment: Comment: Annotation of Complex Heatmap
10 months ago by jv ★ 1.8k
2
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0
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796
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Comment: Comment: Annotation of Complex Heatmap
10 months ago by jv ★ 1.8k
2
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2
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796
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Comment: Comment: Annotation of Complex Heatmap
10 months ago by jv ★ 1.8k
1
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1
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497
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Comment: Comment: Gene Ontonology analysis of DEGs from rice genome
10 months ago by jv ★ 1.8k
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1
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588
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Comment: Comment: Values EXCEEDS the original data range after batch effect correction.
updated 10 months ago by 44k • written 10 months ago by ★ 1.8k
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1.6k
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Comment: Comment: I would like to exclude rRNA in RSEM and quantify other genes.
10 months ago by jv ★ 1.8k
382 results • Page 1 of 8
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