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2.7k
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Comment: Comment: Running AUCell on integrated scRNAseq data
13 months ago by jv ★ 1.8k
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0
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699
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Comment: Comment: flowCore biexponential transformation
13 months ago by jv ★ 1.8k
1
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0
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619
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Answer: Answer: Analysis and results microarray data for research
13 months ago by jv ★ 1.8k
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0
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2.3k
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Comment: Comment: How to use R installed by conda instead of it installed by apt on Ubuntu
17 months ago by jv ★ 1.8k
1
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0
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948
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Answer: Answer: Is it possible to add a dendrogram as a top annotation using ComplexHeatmap ?
18 months ago by jv ★ 1.8k
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0
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567
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Comment: Comment: Seurat: How to get all genes name of a cell ?
18 months ago by jv ★ 1.8k
0
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0
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868
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Comment: Comment: Biological replicates in RNA-seq
18 months ago by jv ★ 1.8k
1
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1
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723
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Comment: Comment: highlight regions in a dot-plot?
18 months ago by jv ★ 1.8k
0
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0
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613
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Comment: Comment: How to find marker genes for whole tissue from several different sub-tissue scRN
18 months ago by jv ★ 1.8k
0
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0
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648
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Comment: Comment: Co-Expression of All Genes with a Single Gene (Spatial Transcriptomics)
18 months ago by jv ★ 1.8k
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0
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1.4k
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Comment: Comment: Cibersort phenotpe file to create signature matrix
18 months ago by jv ★ 1.8k
1
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0
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603
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Comment: Comment: DESeq2 with multiple factors
18 months ago by jv ★ 1.8k
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4.0k
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Comment: Comment: Removing specific cluster based on one gene down regulation
18 months ago by jv ★ 1.8k
0
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0
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3.7k
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Comment: Comment: active.ident slot present but not recognized in seurat object
18 months ago by jv ★ 1.8k
0
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0
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3.7k
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Comment: Comment: active.ident slot present but not recognized in seurat object
18 months ago by jv ★ 1.8k
1
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1
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3.7k
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Answer: Answer: active.ident slot present but not recognized in seurat object
18 months ago by jv ★ 1.8k
0
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0
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835
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Answer: Answer: GSEA with duplicate sample
18 months ago by jv ★ 1.8k
0
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1
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898
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Comment: Comment: Batch effects and what to do about them
19 months ago by jv ★ 1.8k
0
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1
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3.2k
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Comment: Comment: Adding 'gene_name' attribute to each row of GTF/GFF file (missing for CDS, trans
19 months ago by jv ★ 1.8k
0
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1
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950
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Comment: Comment: desgin a primer for CDS
19 months ago by jv ★ 1.8k
0
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0
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4.7k
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Comment: Comment: Need to specify "--chemistry" argument in "cellranger count"
19 months ago by jv ★ 1.8k
2
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2
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1.4k
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Comment: Comment: rRNA contaminants RNASeq
19 months ago by jv ★ 1.8k
0
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0
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573
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Comment: Comment: MEME - minimum of sequence for significative motif result
19 months ago by jv ★ 1.8k
1
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1
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1.8k
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Comment: Comment: scRNA-seq: How does cell number in clusters affect the number of DE genes?
19 months ago by jv ★ 1.8k
1
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1
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1.8k
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Comment: Comment: scRNA-seq: How does cell number in clusters affect the number of DE genes?
19 months ago by jv ★ 1.8k
1
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0
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2.2k
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Comment: Comment: Problems with the input (from TPM) to run the WGCNA
19 months ago by jv ★ 1.8k
1
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1
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2.0k
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Comment: Comment: annotation_names_side does not work in complexheatmap package
19 months ago by jv ★ 1.8k
0
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0
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516
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Answer: Answer: Please help with edgeR script
19 months ago by jv ★ 1.8k
0
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1
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1.8k
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Comment: Comment: Same correlation values obtained at different soft threshold powers in WGCNA sig
19 months ago by jv ★ 1.8k
2
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1
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2.0k
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Answer: Answer: annotation_names_side does not work in complexheatmap package
19 months ago by jv ★ 1.8k
1
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0
replies
1.2k
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Comment: Comment: Right assay and slot for the extraction of normalized data after "sct normalizat
19 months ago by jv ★ 1.8k
1
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2
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823
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Comment: Comment: Spatial transcriptiome analysis
19 months ago by jv ★ 1.8k
0
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0
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1.3k
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Comment: Comment: PSEUDOBULK HELP-DE Expression in scRNA-seq
19 months ago by jv ★ 1.8k
0
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0
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639
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Comment: Comment: Pair files
19 months ago by jv ★ 1.8k
1
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1
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1.3k
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Answer: Answer: PSEUDOBULK HELP-DE Expression in scRNA-seq
19 months ago by jv ★ 1.8k
0
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0
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885
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Comment: Comment: GO-term analysis interpretation
19 months ago by jv ★ 1.8k
0
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0
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1.8k
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Answer: Answer: Issue in installing any package in R
19 months ago by jv ★ 1.8k
1
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2
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1.5k
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Comment: Comment: Older version of SVA (Surrogate Variable Analysis) in R using Bioconductor?
20 months ago by jv ★ 1.8k
0
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1
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1.2k
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Comment: Comment: How to "guess" the transformation based on already-transformed, "normalized coun
20 months ago by jv ★ 1.8k
0
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0
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1.4k
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Comment: Comment: How to extract the DNA sequence 1000 bp around the Transcription start site (TSS
20 months ago by jv ★ 1.8k
0
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1
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1.4k
views
Comment: Comment: How to extract the DNA sequence 1000 bp around the Transcription start site (TSS
20 months ago by jv ★ 1.8k
2
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1
reply
1.0k
views
Comment: Comment: normalize coordinates to the same length
20 months ago by jv ★ 1.8k
0
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1
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655
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Comment: Comment: GOseq for Listeria monocytogenes
20 months ago by jv ★ 1.8k
0
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0
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900
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Comment: Comment: Gene family classification using RNA-seq data
20 months ago by jv ★ 1.8k
0
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1
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900
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Comment: Comment: Gene family classification using RNA-seq data
20 months ago by jv ★ 1.8k
0
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0
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30k
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Comment: Comment: How to get subset of a Seurat object based on metadata?
20 months ago by jv ★ 1.8k
0
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1
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30k
views
Comment: Comment: How to get subset of a Seurat object based on metadata?
20 months ago by jv ★ 1.8k
0
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1
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30k
views
Answer: Answer: How to get subset of a Seurat object based on metadata?
20 months ago by jv ★ 1.8k
0
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0
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3.7k
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Comment: Comment: ClusterProfiler enrichKEGG – remove organism name in plots?
20 months ago by jv ★ 1.8k
0
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0
replies
1.4k
views
Comment: Comment: normalized score for SpatialFeaturePlot
20 months ago by jv ★ 1.8k
382 results • Page 3 of 8
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