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770
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Answer:
Answer: Searching for RNA-seq melanoma samples in TCGA or cBioPortal
22 months ago by
Vitor1
▴ 120
0
votes
1
reply
738
views
Comment:
Comment: Ways to normalize for number of mitocondria in RNA-Seq data
22 months ago by
Vitor1
▴ 120
0
votes
1
reply
738
views
Comment:
Comment: Ways to normalize for number of mitocondria in RNA-Seq data
22 months ago by
Vitor1
▴ 120
0
votes
0
replies
417
views
Normalize Count Data Intrasamples with limma voom
skcm
tcga
limma
voom
22 months ago by
Vitor1
▴ 120
0
votes
0
replies
386
views
Validate RNAseq Models in Microarray Data?
microarray
rnaseq
coxlasso
fpkm
22 months ago by
Vitor1
▴ 120
0
votes
0
replies
2.7k
views
Comment:
Comment: When to use .vcf or .gvcf files from GATK HaplotypeCaller?
2.0 years ago by
Vitor1
▴ 120
2
votes
4
replies
2.7k
views
When to use .vcf or .gvcf files from GATK HaplotypeCaller?
indel
gatk
calling
snp
variant
updated 19 days ago by
Medhat
9.7k • written 2.0 years ago by
Vitor1
▴ 120
0
votes
0
replies
533
views
Answer:
Answer: Where to get raw rna sequencing files for a large database of cancer tissues/cel
2.1 years ago by
Vitor1
▴ 120
0
votes
0
replies
591
views
Answer:
Answer: How can I get into PhD straight from B. SC
2.1 years ago by
Vitor1
▴ 120
0
votes
1
reply
663
views
Comment:
Comment: Relevance for publications in a bioinformatics/computational biology job
2.2 years ago by
Vitor1
▴ 120
4
votes
3
replies
663
views
Relevance for publications in a bioinformatics/computational biology job
publications
updated 23 months ago by
Ram
43k • written 2.2 years ago by
Vitor1
▴ 120
3
votes
0
replies
1.7k
views
Comment:
Comment: gene set enrichment in clusterprofiler
2.3 years ago by
Vitor1
▴ 120
2
votes
0
replies
636
views
Answer:
Answer: error in BiocManager::install("hgu95av2.db")
2.3 years ago by
Vitor1
▴ 120
1
vote
0
replies
705
views
Answer:
Answer: How to perform DESeq2 based on paired sample test?
2.3 years ago by
Vitor1
▴ 120
8
votes
3
replies
1.4k
views
Are the upregulated genes in one comparison the downregulated genes in the inverse comparison?
edgeR
expression
deseq2
gene
DEGs
updated 2.3 years ago by
Gordon Smyth
★ 7.2k • written 2.3 years ago by
Vitor1
▴ 120
1
vote
0
replies
816
views
Comment:
Comment: Is it normal for most data to be lost when filtering data?
2.3 years ago by
Vitor1
▴ 120
1
vote
0
replies
796
views
Comment:
Comment: Hoe do you do differential Splicing using edgeR command diffSpliceDGE?
2.3 years ago by
Vitor1
▴ 120
1
vote
0
replies
1.4k
views
Comment:
Comment: Never use bowtie2 for mapping?
2.3 years ago by
Vitor1
▴ 120
0
votes
0
replies
513
views
Comment:
Comment: R ballgown - Obtain number of transcripts per gene per sample?
2.3 years ago by
Vitor1
▴ 120
1
vote
0
replies
1.8k
views
Comment:
Comment: Histat2 build command is taking too long
2.3 years ago by
Vitor1
▴ 120
0
votes
0
replies
923
views
Answer:
Answer: GEO RNA seq to DEG
2.3 years ago by
Vitor1
▴ 120
0
votes
1
reply
836
views
Comment:
Comment: Is it wrong to use only a random subset of a dataset?
2.3 years ago by
Vitor1
▴ 120
1
vote
3
replies
836
views
Is it wrong to use only a random subset of a dataset?
ethics
research
dataset
updated 12 months ago by
Ram
43k • written 2.4 years ago by
Vitor1
▴ 120
1
vote
1
reply
1.4k
views
Can I use the SRA spot lenght (AvgSpotLen) as the read lenght?
illumina
GEO
SRA
updated 2.4 years ago by
GenoMax
142k • written 2.4 years ago by
Vitor1
▴ 120
1
vote
2
replies
1.3k
views
Multi-fasta file for gffread
gffread
gtf
fasta
updated 8 weeks ago by
alnam
▴ 10 • written 2.5 years ago by
Vitor1
▴ 120
0
votes
0
replies
918
views
Comment:
Comment: StringTie merged transcripts for two different conditions
2.5 years ago by
Vitor1
▴ 120
2
votes
2
replies
918
views
StringTie merged transcripts for two different conditions
gtf
coverage
stringtie
updated 14 months ago by
Ram
43k • written 2.5 years ago by
Vitor1
▴ 120
3
votes
2
replies
1.2k
views
Server denied on SRA download
ENA
fastq
SRA
updated 2.6 years ago by
GenoMax
142k • written 2.6 years ago by
Vitor1
▴ 120
0
votes
0
replies
14k
views
Comment:
Comment: How to get FASTQ reads from the Short Read Archive (SRA)
2.6 years ago by
Vitor1
▴ 120
0
votes
1
reply
1.4k
views
Comment:
Comment: Can I pass a fastq file twice in trimmomatic?
2.6 years ago by
Vitor1
▴ 120
3
votes
4
replies
1.4k
views
Can I pass a fastq file twice in trimmomatic?
fastq
trimmomatic
quality
updated 2.6 years ago by
cpad0112
21k • written 2.6 years ago by
Vitor1
▴ 120
0
votes
0
replies
1.8k
views
Comment:
Comment: Differences in HISAT2 indexes for download
2.7 years ago by
Vitor1
▴ 120
1
vote
2
replies
1.8k
views
Differences in HISAT2 indexes for download
mapping
human
index
hisat2
2.7 years ago by
Vitor1
▴ 120
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