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Answer: Answer: Searching for RNA-seq melanoma samples in TCGA or cBioPortal
2.3 years ago by Vitor1 ▴ 120
0
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1
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851
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Comment: Comment: Ways to normalize for number of mitocondria in RNA-Seq data
2.3 years ago by Vitor1 ▴ 120
0
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1
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851
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Comment: Comment: Ways to normalize for number of mitocondria in RNA-Seq data
2.3 years ago by Vitor1 ▴ 120
0
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0
replies
475
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Normalize Count Data Intrasamples with limma voom
skcm tcga limma voom
2.3 years ago by Vitor1 ▴ 120
0
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0
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446
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Validate RNAseq Models in Microarray Data?
microarray rnaseq coxlasso fpkm
2.4 years ago by Vitor1 ▴ 120
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0
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3.9k
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Comment: Comment: When to use .vcf or .gvcf files from GATK HaplotypeCaller?
2.5 years ago by Vitor1 ▴ 120
2
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4
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3.9k
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When to use .vcf or .gvcf files from GATK HaplotypeCaller?
indel gatk calling snp variant
updated 6 months ago by 9.8k • written 2.5 years ago by ▴ 120
0
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0
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593
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Answer: Answer: Where to get raw rna sequencing files for a large database of cancer tissues/cel
2.6 years ago by Vitor1 ▴ 120
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0
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728
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Answer: Answer: How can I get into PhD straight from B. SC
2.6 years ago by Vitor1 ▴ 120
0
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1
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779
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Comment: Comment: Relevance for publications in a bioinformatics/computational biology job
2.7 years ago by Vitor1 ▴ 120
4
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3
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779
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Relevance for publications in a bioinformatics/computational biology job
publications
updated 2.4 years ago by 44k • written 2.7 years ago by ▴ 120
3
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0
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2.1k
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Comment: Comment: gene set enrichment in clusterprofiler
2.8 years ago by Vitor1 ▴ 120
2
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0
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740
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Answer: Answer: error in BiocManager::install("hgu95av2.db")
2.8 years ago by Vitor1 ▴ 120
1
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0
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768
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Answer: Answer: How to perform DESeq2 based on paired sample test?
2.8 years ago by Vitor1 ▴ 120
8
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3
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1.8k
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Are the upregulated genes in one comparison the downregulated genes in the inverse comparison?
edgeR expression deseq2 gene DEGs
updated 2.8 years ago by ★ 7.6k • written 2.8 years ago by ▴ 120
1
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0
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942
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Comment: Comment: Is it normal for most data to be lost when filtering data?
2.8 years ago by Vitor1 ▴ 120
1
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0
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944
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Comment: Comment: Hoe do you do differential Splicing using edgeR command diffSpliceDGE?
2.8 years ago by Vitor1 ▴ 120
1
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0
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1.6k
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Comment: Comment: Never use bowtie2 for mapping?
2.8 years ago by Vitor1 ▴ 120
0
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0
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619
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Comment: Comment: R ballgown - Obtain number of transcripts per gene per sample?
2.8 years ago by Vitor1 ▴ 120
1
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0
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2.0k
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Comment: Comment: Histat2 build command is taking too long
2.9 years ago by Vitor1 ▴ 120
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0
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1.0k
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Answer: Answer: GEO RNA seq to DEG
2.9 years ago by Vitor1 ▴ 120
0
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1
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935
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Comment: Comment: Is it wrong to use only a random subset of a dataset?
2.9 years ago by Vitor1 ▴ 120
1
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3
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935
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Is it wrong to use only a random subset of a dataset?
ethics research dataset
updated 18 months ago by 44k • written 2.9 years ago by ▴ 120
1
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1
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1.7k
views
Can I use the SRA spot lenght (AvgSpotLen) as the read lenght?
illumina GEO SRA
updated 2.9 years ago by 147k • written 2.9 years ago by ▴ 120
1
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2
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1.5k
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Multi-fasta file for gffread
gffread gtf fasta
updated 8 months ago by ▴ 10 • written 3.0 years ago by ▴ 120
0
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0
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1.0k
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Comment: Comment: StringTie merged transcripts for two different conditions
3.0 years ago by Vitor1 ▴ 120
2
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2
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1.0k
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StringTie merged transcripts for two different conditions
gtf coverage stringtie
updated 20 months ago by 44k • written 3.0 years ago by ▴ 120
3
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2
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1.3k
views
Server denied on SRA download
ENA fastq SRA
updated 3.1 years ago by 147k • written 3.1 years ago by ▴ 120
0
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0
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16k
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Comment: Comment: How to get FASTQ reads from the Short Read Archive (SRA)
3.1 years ago by Vitor1 ▴ 120
0
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1
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1.6k
views
Comment: Comment: Can I pass a fastq file twice in trimmomatic?
3.1 years ago by Vitor1 ▴ 120
3
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4
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1.6k
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Can I pass a fastq file twice in trimmomatic?
fastq trimmomatic quality
updated 3.1 years ago by 21k • written 3.1 years ago by ▴ 120
0
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0
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1.9k
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Comment: Comment: Differences in HISAT2 indexes for download
3.2 years ago by Vitor1 ▴ 120
1
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2
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1.9k
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Differences in HISAT2 indexes for download
mapping human index hisat2
3.2 years ago by Vitor1 ▴ 120
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