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584
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switching from illumination to NEB prep kits
NEB WGS WES illumina
updated 17 months ago by 147k • written 17 months ago by ▴ 180
0
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0
replies
859
views
panel of normals for mutect2
mutect2 gatk NGS PoN somatic
3.6 years ago by lait ▴ 180
0
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1
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1.5k
views
an efficient way to annotate mutations from vcf files using multiple annotation files
vep ensembl cadd clinvar lovd
updated 4.3 years ago by 20 • written 4.9 years ago by ▴ 180
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0
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1.0k
views
VCF files never get annotated with PG tag for CalculateGenotypePosteriors
GATK CalculateGenotypePosteriors denovo Genotype
updated 4.7 years ago by 20 • written 4.9 years ago by ▴ 180
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0
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2.1k
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Comment: C: error bcftools isec
5.0 years ago by lait ▴ 180
1
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2
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2.1k
views
error bcftools isec
bcftools vcf tabix
updated 5.0 years ago by ★ 18k • written 5.0 years ago by ▴ 180
7
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3
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1.5k
views
number of cycles, Nextseq500, for whole exoems equencing, which option is more efficient?
hiseq nextseq cycles reads-length
updated 5.3 years ago by ★ 1.1k • written 5.3 years ago by ▴ 180
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1
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1.1k
views
Comment: C: EXCAVATOR shows 1 deletion which is not TRUE in IGV
5.5 years ago by lait ▴ 180
2
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3
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1.1k
views
EXCAVATOR shows 1 deletion which is not TRUE in IGV
excavator igv wes exome cnv
5.5 years ago by lait ▴ 180
1
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1
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782
views
bionano's raw data of images, safe to delete?
bionano molecules rawdata
5.6 years ago by lait ▴ 180
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1
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1.6k
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Comment: C: bionano hybrid scaffold
5.6 years ago by lait ▴ 180
2
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4
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1.6k
views
bionano hybrid scaffold
WES bionano optical mapping illumina
updated 5.6 years ago by 47k • written 5.6 years ago by ▴ 180
8
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4
replies
2.4k
views
tool to detect large deletions
deletions IGV wes
updated 5.6 years ago by ▴ 470 • written 5.6 years ago by ▴ 180
0
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0
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2.4k
views
Comment: C: tool to detect large deletions
5.6 years ago by lait ▴ 180
1
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0
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1.1k
views
putative mosaic mutations
mosaic de novo wes sequencing
5.7 years ago by lait ▴ 180
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2
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3.3k
views
Comment: C: find coverage of specific exomes from a bam file
6.0 years ago by lait ▴ 180
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0
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3.3k
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Comment: C: find coverage of specific exomes from a bam file
6.0 years ago by lait ▴ 180
0
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2
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3.3k
views
Comment: C: find coverage of specific exomes from a bam file
6.0 years ago by lait ▴ 180
0
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1
reply
3.3k
views
Comment: C: find coverage of specific exomes from a bam file
6.0 years ago by lait ▴ 180
0
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1
reply
3.3k
views
Comment: C: find coverage of specific exomes from a bam file
6.0 years ago by lait ▴ 180
0
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1
reply
3.3k
views
Comment: C: find coverage of specific exomes from a bam file
6.0 years ago by lait ▴ 180
6
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14
replies
3.3k
views
find coverage of specific exomes from a bam file
coverage bedtools genomecov bam bed
updated 6.0 years ago by 164k • written 6.0 years ago by ▴ 180
0
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1
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3.6k
views
Comment: C: Course: Practical GWAS using Linux and R. 23-27 October 2017, Berlin (Germany)
6.1 years ago by lait ▴ 180
8
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7
replies
2.9k
views
snps/indels with individual genotypes from 1000 genomes ftp site
1000 genomes ftp genotypes vcf
updated 2.4 years ago by • 0 • written 6.3 years ago by ▴ 180
4
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7
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5.0k
views
most efficient way to read from large vcf files
vcf
6.3 years ago by lait ▴ 180
0
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0
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1.0k
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how to get genomic position from protein pdb ID+AA residue position within the protein
pdb pisite protein protein-protein interaction
6.3 years ago by lait ▴ 180
0
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0
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3.2k
views
Comment: C: is this a potential mosaicism?
6.3 years ago by lait ▴ 180
0
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0
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3.2k
views
Comment: C: is this a potential mosaicism?
6.3 years ago by lait ▴ 180
9
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15
replies
3.2k
views
is this a potential mosaicism?
mosaicism denovo IGV BAM alignment
6.3 years ago by lait ▴ 180
0
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1
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3.2k
views
Comment: C: is this a potential mosaicism?
6.3 years ago by lait ▴ 180
0
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1
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3.2k
views
Comment: C: is this a potential mosaicism?
6.3 years ago by lait ▴ 180
0
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0
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3.2k
views
Comment: C: is this a potential mosaicism?
6.3 years ago by lait ▴ 180
1
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1
reply
3.2k
views
Comment: C: is this a potential mosaicism?
6.3 years ago by lait ▴ 180
2
votes
1
reply
1.4k
views
haplotype phasing in duos
haplotype phasing trios duos RNA-Seq
updated 6.4 years ago by ▴ 60 • written 6.6 years ago by ▴ 180
0
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0
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1.0k
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processing parent-child duos
duos ngs exome sequencing denovo
6.5 years ago by lait ▴ 180
0
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1
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1.6k
views
Comment: C: low coverage & BAF plots have three peaks
6.7 years ago by lait ▴ 180
0
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1
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1.6k
views
Comment: C: low coverage & BAF plots have three peaks
6.7 years ago by lait ▴ 180
0
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0
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2.3k
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Comment: C: sample mixing when demultiplexing
6.7 years ago by lait ▴ 180
0
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1
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2.3k
views
Comment: C: sample mixing when demultiplexing
6.7 years ago by lait ▴ 180
4
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4
replies
2.3k
views
sample mixing when demultiplexing
demultiplex WES human samples NGS BAM
6.7 years ago by lait ▴ 180
0
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4
replies
1.6k
views
low coverage & BAF plots have three peaks
b-allele frequency low coverage WES human samples
6.7 years ago by lait ▴ 180
1
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1
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2.5k
views
Comment: C: Workshop: Metagenomics, Metatranscriptomics, and multi'omics for microbial commu
6.8 years ago by lait ▴ 180
0
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0
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3.4k
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Comment: C: how to distinguish mosaicism out of germline de novo mutations
6.8 years ago by lait ▴ 180
5
votes
1
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1.6k
views
identifying TP53 germline mutations which are also in tumor cells.
germline tp53 somatic varscan mutect
updated 6.8 years ago by ▴ 600 • written 6.8 years ago by ▴ 180
0
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1
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3.4k
views
Comment: C: how to distinguish mosaicism out of germline de novo mutations
6.8 years ago by lait ▴ 180
3
votes
5
replies
3.4k
views
how to distinguish mosaicism out of germline de novo mutations
de novo mutations mosaicism WES allele frequency
updated 6.8 years ago by ★ 1.6k • written 6.8 years ago by ▴ 180
0
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1
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2.6k
views
Comment: C: demultiplexing with same indices across different lanes
6.8 years ago by lait ▴ 180
0
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1
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2.6k
views
Comment: C: demultiplexing with same indices across different lanes
6.8 years ago by lait ▴ 180
0
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1
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2.6k
views
Comment: C: demultiplexing with same indices across different lanes
6.8 years ago by lait ▴ 180
1
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10
replies
2.6k
views
demultiplexing with same indices across different lanes
demultiplex multiplex index lane bcl2fastq
6.8 years ago by lait ▴ 180
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