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17
votes
8
replies
12k
views
9 follow
Combining Microarray and RNAseq data
RNA-Seq normalization R microarray
updated 16 months ago by ▴ 80 • written 9.2 years ago by ★ 1.2k
17
votes
15
replies
36k
views
9 follow
Mapping Mouse gene names to Human gene names
RNA-Seq PDX
updated 2.2 years ago by 44k • written 9.6 years ago by ★ 1.2k
6
votes
6
replies
9.3k
views
Merge vcf files from Multiple Samples
vcftools vcf
updated 3.1 years ago by • 0 • written 10.8 years ago by ★ 1.2k
6
votes
6
replies
4.6k
views
Clustering of genes using FPKM
RNA-Seq clustering FPKM R bioconductor
updated 4.4 years ago by 3.3k • written 10.2 years ago by ★ 1.2k
1
vote
7
replies
7.7k
views
6 follow
Using Samtools mpileup with Varscan
next-gen RNA-Seq varscan samtools
updated 2.3 years ago by 44k • written 9.6 years ago by ★ 1.2k
3
votes
2
replies
2.5k
views
Validating Predictions Of Small Insertions / Deletions
gatk variant
updated 5.1 years ago by 20 • written 11.0 years ago by ★ 1.2k
0
votes
0
replies
6.2k
views
Comment: C: Filter overlapping reads in pysam
updated 5.1 years ago by 44k • written 10.7 years ago by ★ 1.2k
0
votes
1
reply
6.2k
views
Comment: C: Filter overlapping reads in pysam
updated 5.1 years ago by 44k • written 10.7 years ago by ★ 1.2k
0
votes
1
reply
6.2k
views
Comment: C: Filter overlapping reads in pysam
updated 5.1 years ago by 44k • written 10.7 years ago by ★ 1.2k
0
votes
2
replies
9.3k
views
Comment: C: Merge vcf files from Multiple Samples
updated 5.2 years ago by 44k • written 10.8 years ago by ★ 1.2k
0
votes
0
replies
36k
views
Comment: C: Samtools And Region List
updated 5.2 years ago by 44k • written 10.8 years ago by ★ 1.2k
0
votes
1
reply
3.1k
views
Comment: C: Protein Domains from fusions
updated 5.2 years ago by 44k • written 9.2 years ago by ★ 1.2k
0
votes
1
reply
8.5k
views
Answer: A: Oncofuse: Prediction Of Driver Gene Fusions From Ngs Data
updated 5.2 years ago by 44k • written 9.2 years ago by ★ 1.2k
0
votes
0
replies
2.9k
views
Comment: C: methods of integrating microarray data and RNAseq data
updated 5.2 years ago by 44k • written 9.2 years ago by ★ 1.2k
22
votes
45
replies
16k
views
9 follow
Tool to separate human and mouse rna seq reads
RNA-Seq next-gen-sequencing
updated 2.1 years ago by 44k • written 9.8 years ago by ★ 1.2k
0
votes
0
replies
3.0k
views
Comment: C: FPKM for Normal vs Tumor
updated 5.6 years ago by 44k • written 10.2 years ago by ★ 1.2k
0
votes
5
replies
3.0k
views
FPKM for Normal vs Tumor
FPKM RNA-Seq cufflinks
updated 3.0 years ago by 44k • written 10.2 years ago by ★ 1.2k
1
vote
0
replies
6.9k
views
Visualize gene fusions in IGV
RNA-Seq next-gen
5.7 years ago by Ron ★ 1.2k
0
votes
0
replies
16k
views
Comment: C: Tool to separate human and mouse rna seq reads
5.8 years ago by Ron ★ 1.2k
1
vote
0
replies
3.5k
views
Answer: A: Gene expression profile analysis
5.8 years ago by Ron ★ 1.2k
0
votes
0
replies
1.7k
views
Comment: C: Drugs targeting Gene Fusions
5.8 years ago by Ron ★ 1.2k
1
vote
2
replies
1.7k
views
Drugs targeting Gene Fusions
RNA-Seq next-gen
updated 5.9 years ago by 5.0k • written 5.9 years ago by ★ 1.2k
0
votes
0
replies
31k
views
Comment: C: Drug to Target/Gene/Protein Interaction Databases
5.9 years ago by Ron ★ 1.2k
5
votes
10
replies
2.2k
views
How to recreate this dot plot?
R next-gen RNA-Seq
updated 5.9 years ago by 12k • written 5.9 years ago by ★ 1.2k
0
votes
0
replies
2.2k
views
Comment: C: Plots in R for bioinformatics analyses
5.9 years ago by Ron ★ 1.2k
4
votes
0
replies
11k
views
Answer: A: Saving individual clusters from heatmaps
5.9 years ago by Ron ★ 1.2k
0
votes
0
replies
3.5k
views
Comment: C: Counting number of base pairs and features in each bed file
6.0 years ago by Ron ★ 1.2k
0
votes
1
reply
3.5k
views
Comment: C: Counting number of base pairs and features in each bed file
6.0 years ago by Ron ★ 1.2k
0
votes
1
reply
3.5k
views
Comment: C: Counting number of base pairs and features in each bed file
6.0 years ago by Ron ★ 1.2k
2
votes
6
replies
3.5k
views
Counting number of base pairs and features in each bed file
RNA-Seq ngs
6.0 years ago by Ron ★ 1.2k
0
votes
1
reply
16k
views
Comment: C: Tool to separate human and mouse rna seq reads
updated 6.4 years ago by 44k • written 9.4 years ago by ★ 1.2k
0
votes
1
reply
16k
views
Comment: C: Tool to separate human and mouse rna seq reads
updated 6.4 years ago by 44k • written 9.4 years ago by ★ 1.2k
0
votes
0
replies
16k
views
Comment: C: Tool to separate human and mouse rna seq reads
updated 6.4 years ago by 44k • written 9.4 years ago by ★ 1.2k
0
votes
0
replies
16k
views
Comment: Comment: Tool to separate human and mouse rna seq reads
updated 2.4 years ago by 44k • written 9.4 years ago by ★ 1.2k
0
votes
1
reply
16k
views
Comment: Comment: Tool to separate human and mouse rna seq reads
updated 2.1 years ago by 44k • written 9.4 years ago by ★ 1.2k
0
votes
1
reply
16k
views
Comment: C: Tool to separate human and mouse ran seq reads
updated 6.4 years ago by 44k • written 9.8 years ago by ★ 1.2k
0
votes
1
reply
16k
views
Comment: Comment: Tool to separate human and mouse rna seq reads
updated 2.1 years ago by 44k • written 9.8 years ago by ★ 1.2k
0
votes
1
reply
1.6k
views
Database of Mutations and the associated drugs
WES ngs
updated 6.5 years ago by 89k • written 6.5 years ago by ★ 1.2k
1
vote
2
replies
2.6k
views
List of known fusions
RNA-Seq fusion ngs next-gen
updated 6.6 years ago by ▴ 430 • written 8.2 years ago by ★ 1.2k
2
votes
5
replies
5.7k
views
Visualize Gene Fusions
RNA-Seq fusion next-gen R
updated 6.7 years ago by ▴ 430 • written 8.4 years ago by ★ 1.2k
6
votes
6
replies
7.8k
views
Interpreting GSEA results
RNA-Seq GSEA next-gen
updated 6.8 years ago by ▴ 20 • written 7.2 years ago by ★ 1.2k
5
votes
6
replies
8.5k
views
Deconvolution methods on RNAseq data
RNA-Seq next-gen sequencing R bioconductor
updated 6.8 years ago by ▴ 120 • written 8.0 years ago by ★ 1.2k
0
votes
1
reply
1.3k
views
Comment: C: Validating driver genes
6.8 years ago by Ron ★ 1.2k
0
votes
0
replies
862
views
Ratio of samples to do differential expression
RNA-Seq next-gen
6.9 years ago by Ron ★ 1.2k
0
votes
0
replies
2.9k
views
Comment: C: Using Cufflinks for Novel Transcripts
7.0 years ago by Ron ★ 1.2k
0
votes
2
replies
2.9k
views
Using Cufflinks for Novel Transcripts
RNA-Seq cufflinks
updated 7.0 years ago by 11k • written 7.0 years ago by ★ 1.2k
0
votes
0
replies
2.2k
views
Comment: C: Does Cufflinks report chimeric transcripts/fusion genes?
7.0 years ago by Ron ★ 1.2k
0
votes
2
replies
2.2k
views
Mutation analysis on RNAseq
RNA-Seq mutation next-gen SNP snpEff
updated 7.2 years ago by ★ 2.6k • written 8.4 years ago by ★ 1.2k
0
votes
0
replies
7.8k
views
Comment: C: Interpreting GSEA results
7.2 years ago by Ron ★ 1.2k
0
votes
0
replies
7.8k
views
Comment: C: Interpreting GSEA results
7.2 years ago by Ron ★ 1.2k
315 results • Page 1 of 7
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