Profile Posts Awards
Show
all questions tools blogs news tutorials forum answers comments
1
vote
0
replies
9.0k
views
Answer: Answer: Mirror Manhattan Plot
4.0 years ago by Jimbou ▴ 960
8
votes
0
replies
15k
views
Answer: A: Finding overlaps between GRanges objects
4.6 years ago by Jimbou ▴ 960
0
votes
0
replies
8.9k
views
Answer: A: manhattan plot for different color in R
4.6 years ago by Jimbou ▴ 960
0
votes
1
reply
2.4k
views
Comment: C: Plot GWAS p value distribution for multiple traits
4.7 years ago by Jimbou ▴ 960
2
votes
1
reply
3.4k
views
Answer: A: updating SNP names in VCF file
5.0 years ago by Jimbou ▴ 960
0
votes
0
replies
12k
views
Comment: C: Partial or complete overlap of two genomic ranges
5.1 years ago by Jimbou ▴ 960
0
votes
0
replies
1.1k
views
Comment: C: Snptest association test results OR and BETA difference
5.1 years ago by Jimbou ▴ 960
3
votes
1
reply
3.6k
views
Answer: Answer: Gviz (Bioconductor/R) ordering of groups in AnnotationTrack
updated 2.9 years ago by 45k • written 9.6 years ago by ▴ 960
1
vote
0
replies
3.4k
views
Comment: C: Snpsift to filter a number of genes
5.2 years ago by Jimbou ▴ 960
2
votes
2
replies
1.7k
views
SnpSift Annotate replace ID column
snps snpsift snpeff annotation
updated 5.3 years ago by ▴ 70 • written 5.4 years ago by ▴ 960
0
votes
0
replies
1.3k
views
Comment: C: how to find haplotype of SNPs
5.3 years ago by Jimbou ▴ 960
1
vote
1
reply
2.2k
views
Comment: C: CYP2D6 alleles determination
updated 5.5 years ago by 45k • written 9.5 years ago by ▴ 960
0
votes
2
replies
2.5k
views
Answer: C: plink remove snps with marker
updated 5.5 years ago by 45k • written 9.5 years ago by ▴ 960
1
vote
1
reply
3.6k
views
Answer: C: How can identify the driver genes with germline mutations ?
updated 5.5 years ago by 45k • written 9.5 years ago by ▴ 960
0
votes
0
replies
2.6k
views
Comment: C: Calculate correlation for each rows?
updated 5.5 years ago by 45k • written 9.5 years ago by ▴ 960
1
vote
0
replies
1.8k
views
Answer: A: Extracting sequences from frequency matrix
updated 5.5 years ago by 45k • written 9.6 years ago by ▴ 960
4
votes
0
replies
4.4k
views
Answer: A: Ideogram in Gviz without a valid UCSC genome
updated 5.5 years ago by 45k • written 9.6 years ago by ▴ 960
8
votes
0
replies
43k
views
Answer: A: Aggregate multiple rows based on common values in given columns in R
updated 5.5 years ago by 45k • written 9.6 years ago by ▴ 960
2
votes
1
reply
10k
views
Answer: Answer: Coding genotypes from nucleotides to 0/1/2 in R.
updated 2.5 years ago by 45k • written 10.0 years ago by ▴ 960
0
votes
1
reply
22k
views
Comment: C: Pathway Enrichment Analysis, Clustering and Scoring with pathfindR
5.7 years ago by Jimbou ▴ 960
0
votes
0
replies
3.3k
views
Comment: C: Read File Format .Bam
updated 5.7 years ago by 45k • written 11.3 years ago by ▴ 960
8
votes
1
reply
7.3k
views
Answer: A: Annotate genomic positions with dbSNP rsIds
6.1 years ago by Jimbou ▴ 960
0
votes
0
replies
7.3k
views
Comment: C: Annotate genomic positions with dbSNP rsIds
6.1 years ago by Jimbou ▴ 960
10
votes
5
replies
7.3k
views
Annotate genomic positions with dbSNP rsIds
dbSNP bed
updated 24 months ago by 45k • written 6.1 years ago by ▴ 960
2
votes
0
replies
2.5k
views
Comment: C: R programming: match and rearrange
updated 6.8 years ago by 45k • written 10.1 years ago by ▴ 960
0
votes
0
replies
1.8k
views
Difference of CN probes and SNP probes on genotyping microchip arrays
Affymetrix SNP CNV array
updated 7.9 years ago by 20 • written 7.9 years ago by ▴ 960
0
votes
0
replies
2.9k
views
Comment: C: Loading IMPUTE2 output into R for eQTL analysis
9.0 years ago by Jimbou ▴ 960
1
vote
0
replies
4.7k
views
Comment: C: I cannot read data into R (read.affy)
9.1 years ago by Jimbou ▴ 960
0
votes
0
replies
2.1k
views
Comment: C: PLINK and 1000 Genome browser
9.2 years ago by Jimbou ▴ 960
1
vote
0
replies
3.7k
views
Comment: C: CNV analysis for targeted genomic region
9.2 years ago by Jimbou ▴ 960
0
votes
1
reply
3.7k
views
Comment: C: CNV analysis for targeted genomic region
9.2 years ago by Jimbou ▴ 960
0
votes
0
replies
2.6k
views
Answer: A: Imputation for genotyping data
9.3 years ago by Jimbou ▴ 960
0
votes
1
reply
2.1k
views
Comment: C: What is the best method for determining copy number of a specific gene (from sal
9.4 years ago by Jimbou ▴ 960
0
votes
0
replies
2.3k
views
Comment: C: Good way of plotting a statistic with error bars
9.4 years ago by Jimbou ▴ 960
0
votes
0
replies
2.2k
views
Comment: C: CYP2D6 alleles determination
9.5 years ago by Jimbou ▴ 960
0
votes
2
replies
2.6k
views
Comment: C: Calculate correlation for each rows?
9.5 years ago by Jimbou ▴ 960
8
votes
5
replies
12k
views
Genome Coordinates Between Assemblies: Liftover A Snp Array
snp liftover assembly array hg19
9.6 years ago by Jimbou ▴ 960
2
votes
0
replies
4.0k
views
Answer: Answer: Impute2 dosage file into standard Plink files
updated 2.8 years ago by 45k • written 9.7 years ago by ▴ 960
1
vote
0
replies
2.8k
views
Comment: Comment: How to just use 1000 genomes phase 3 CHB+JPT+CHS data as reference to impute?
updated 2.6 years ago by 45k • written 9.9 years ago by ▴ 960
0
votes
0
replies
2.8k
views
Comment: Comment: Principal component analysis
updated 2.5 years ago by 45k • written 10.0 years ago by ▴ 960
2
votes
0
replies
7.8k
views
Comment: C: How to visualize a list of genes on their chromosomal position?
10.0 years ago by Jimbou ▴ 960
0
votes
1
reply
2.2k
views
Comment: Comment: Is it possible to create a plink format file from these illumina data?
updated 2.7 years ago by 45k • written 10.0 years ago by ▴ 960
0
votes
0
replies
2.4k
views
Comment: Comment: Comparison of sequence homolgy of two genes
updated 2.4 years ago by 45k • written 10.1 years ago by ▴ 960
1
vote
3
replies
2.4k
views
Comparison of sequence homolgy of two genes
Webtool sequence homology
updated 2.4 years ago by 45k • written 10.1 years ago by ▴ 960
4
votes
1
reply
4.8k
views
Answer: Answer: R programming: genotype concordance
updated 2.4 years ago by 45k • written 10.1 years ago by ▴ 960
0
votes
1
reply
4.8k
views
Comment: C: R programming: genotype concordance
10.1 years ago by Jimbou ▴ 960
17
votes
7
replies
12k
views
Partial or complete overlap of two genomic ranges
GRange sequence R
updated 3.1 years ago by 45k • written 11.2 years ago by ▴ 960
14
votes
2
replies
18k
views
TCGA Segement Mean, GISTIC and CNVs
TCGA CNV Affy GISTIC2
updated 3.0 years ago by 45k • written 10.3 years ago by ▴ 960
0
votes
1
reply
3.8k
views
Comment: C: 1000 Genome genotypes for list of snps
10.2 years ago by Jimbou ▴ 960
0
votes
0
replies
3.1k
views
Comment: Comment: Making Regional Association Plots with the gap package for R
updated 3.0 years ago by 45k • written 10.2 years ago by ▴ 960
82 results • Page 1 of 2
Content Search
Users
Tags
Badges
Help About
FAQ
Access RSS
API
Stats

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.

Powered by the version 2.3.6