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1
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0
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8.3k
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Answer: Answer: Mirror Manhattan Plot
3.4 years ago by Jimbou ▴ 960
8
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0
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14k
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Answer: A: Finding overlaps between GRanges objects
4.0 years ago by Jimbou ▴ 960
0
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0
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7.9k
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Answer: A: manhattan plot for different color in R
4.1 years ago by Jimbou ▴ 960
0
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1
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2.1k
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Comment: C: Plot GWAS p value distribution for multiple traits
4.1 years ago by Jimbou ▴ 960
2
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1
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2.9k
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Answer: A: updating SNP names in VCF file
4.5 years ago by Jimbou ▴ 960
0
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0
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12k
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Comment: C: Partial or complete overlap of two genomic ranges
4.5 years ago by Jimbou ▴ 960
0
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0
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998
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Comment: C: Snptest association test results OR and BETA difference
4.5 years ago by Jimbou ▴ 960
3
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1
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3.4k
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Answer: Answer: Gviz (Bioconductor/R) ordering of groups in AnnotationTrack
updated 2.3 years ago by 44k • written 9.0 years ago by ▴ 960
1
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0
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3.1k
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Comment: C: Snpsift to filter a number of genes
4.7 years ago by Jimbou ▴ 960
2
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2
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1.5k
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SnpSift Annotate replace ID column
snps snpsift snpeff annotation
updated 4.7 years ago by ▴ 70 • written 4.8 years ago by ▴ 960
0
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0
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1.1k
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Comment: C: how to find haplotype of SNPs
4.8 years ago by Jimbou ▴ 960
1
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1
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1.9k
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Comment: C: CYP2D6 alleles determination
updated 4.9 years ago by 44k • written 8.9 years ago by ▴ 960
0
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2
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2.3k
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Answer: C: plink remove snps with marker
updated 5.0 years ago by 44k • written 8.9 years ago by ▴ 960
1
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1
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3.2k
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Answer: C: How can identify the driver genes with germline mutations ?
updated 5.0 years ago by 44k • written 9.0 years ago by ▴ 960
0
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0
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2.4k
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Comment: C: Calculate correlation for each rows?
updated 5.0 years ago by 44k • written 9.0 years ago by ▴ 960
1
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0
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1.5k
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Answer: A: Extracting sequences from frequency matrix
updated 5.0 years ago by 44k • written 9.0 years ago by ▴ 960
4
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0
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4.2k
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Answer: A: Ideogram in Gviz without a valid UCSC genome
updated 5.0 years ago by 44k • written 9.0 years ago by ▴ 960
8
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0
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43k
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Answer: A: Aggregate multiple rows based on common values in given columns in R
updated 5.0 years ago by 44k • written 9.0 years ago by ▴ 960
2
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1
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9.7k
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Answer: Answer: Coding genotypes from nucleotides to 0/1/2 in R.
updated 23 months ago by 44k • written 9.4 years ago by ▴ 960
0
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1
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20k
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Comment: C: Pathway Enrichment Analysis, Clustering and Scoring with pathfindR
5.1 years ago by Jimbou ▴ 960
0
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0
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3.2k
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Comment: C: Read File Format .Bam
updated 5.1 years ago by 44k • written 10.7 years ago by ▴ 960
8
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1
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6.4k
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Answer: A: Annotate genomic positions with dbSNP rsIds
5.5 years ago by Jimbou ▴ 960
0
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0
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6.4k
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Comment: C: Annotate genomic positions with dbSNP rsIds
5.5 years ago by Jimbou ▴ 960
10
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5
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6.4k
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Annotate genomic positions with dbSNP rsIds
dbSNP bed
updated 17 months ago by 44k • written 5.5 years ago by ▴ 960
2
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0
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2.3k
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Comment: C: R programming: match and rearrange
updated 6.2 years ago by 44k • written 9.6 years ago by ▴ 960
0
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0
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1.7k
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Difference of CN probes and SNP probes on genotyping microchip arrays
Affymetrix SNP CNV array
updated 7.3 years ago by 20 • written 7.3 years ago by ▴ 960
0
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0
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2.8k
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Comment: C: Loading IMPUTE2 output into R for eQTL analysis
8.5 years ago by Jimbou ▴ 960
1
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0
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4.4k
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Comment: C: I cannot read data into R (read.affy)
8.6 years ago by Jimbou ▴ 960
0
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0
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2.0k
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Comment: C: PLINK and 1000 Genome browser
8.6 years ago by Jimbou ▴ 960
1
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0
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3.4k
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Comment: C: CNV analysis for targeted genomic region
8.7 years ago by Jimbou ▴ 960
0
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1
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3.4k
views
Comment: C: CNV analysis for targeted genomic region
8.7 years ago by Jimbou ▴ 960
0
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0
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2.5k
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Answer: A: Imputation for genotyping data
8.7 years ago by Jimbou ▴ 960
0
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1
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1.9k
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Comment: C: What is the best method for determining copy number of a specific gene (from sal
8.8 years ago by Jimbou ▴ 960
0
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0
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2.1k
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Comment: C: Good way of plotting a statistic with error bars
8.9 years ago by Jimbou ▴ 960
0
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0
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1.9k
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Comment: C: CYP2D6 alleles determination
8.9 years ago by Jimbou ▴ 960
0
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2
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2.4k
views
Comment: C: Calculate correlation for each rows?
9.0 years ago by Jimbou ▴ 960
8
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5
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11k
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Genome Coordinates Between Assemblies: Liftover A Snp Array
snp liftover assembly array hg19
9.0 years ago by Jimbou ▴ 960
2
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0
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3.8k
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Answer: Answer: Impute2 dosage file into standard Plink files
updated 2.2 years ago by 44k • written 9.2 years ago by ▴ 960
1
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0
replies
2.7k
views
Comment: Comment: How to just use 1000 genomes phase 3 CHB+JPT+CHS data as reference to impute?
updated 2.1 years ago by 44k • written 9.3 years ago by ▴ 960
0
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0
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2.6k
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Comment: Comment: Principal component analysis
updated 23 months ago by 44k • written 9.4 years ago by ▴ 960
2
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0
replies
7.5k
views
Comment: C: How to visualize a list of genes on their chromosomal position?
9.4 years ago by Jimbou ▴ 960
0
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1
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2.1k
views
Comment: Comment: Is it possible to create a plink format file from these illumina data?
updated 2.2 years ago by 44k • written 9.5 years ago by ▴ 960
0
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0
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2.2k
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Comment: Comment: Comparison of sequence homolgy of two genes
updated 22 months ago by 44k • written 9.5 years ago by ▴ 960
1
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3
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2.2k
views
Comparison of sequence homolgy of two genes
Webtool sequence homology
updated 22 months ago by 44k • written 9.5 years ago by ▴ 960
4
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1
reply
4.5k
views
Answer: Answer: R programming: genotype concordance
updated 21 months ago by 44k • written 9.5 years ago by ▴ 960
0
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1
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4.5k
views
Comment: C: R programming: genotype concordance
9.5 years ago by Jimbou ▴ 960
17
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7
replies
12k
views
Partial or complete overlap of two genomic ranges
GRange sequence R
updated 2.5 years ago by 44k • written 10.6 years ago by ▴ 960
14
votes
2
replies
17k
views
TCGA Segement Mean, GISTIC and CNVs
TCGA CNV Affy GISTIC2
updated 2.4 years ago by 44k • written 9.7 years ago by ▴ 960
0
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1
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3.6k
views
Comment: C: 1000 Genome genotypes for list of snps
9.6 years ago by Jimbou ▴ 960
0
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0
replies
2.9k
views
Comment: Comment: Making Regional Association Plots with the gap package for R
updated 2.4 years ago by 44k • written 9.6 years ago by ▴ 960
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