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353
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Comment: Comment: How to handle duplicated genes in TCGA data?
3 days ago by Zhenyu Zhang ★ 1.2k
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211
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Comment: Comment: Genotyping sites with N in reference genome
5 days ago by Zhenyu Zhang ★ 1.2k
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314
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Comment: Comment: Extracting mutation status from MAF files - TCGA
8 days ago by Zhenyu Zhang ★ 1.2k
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245
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Comment: Comment: Obtaining Infinium Methylation450K manifest for hg38
8 days ago by Zhenyu Zhang ★ 1.2k
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251
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Answer: Answer: Nomalization - TCGA, RNA-seq and Microarray
8 days ago by Zhenyu Zhang ★ 1.2k
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1.2k
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Comment: Comment: The GDC Legacy Archive is retiring soon.
15 days ago by Zhenyu Zhang ★ 1.2k
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1
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642
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Comment: Comment: How to access TCGA samples that were treated with a specific drug?
15 days ago by Zhenyu Zhang ★ 1.2k
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2
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1.2k
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News: The GDC Legacy Archive is retiring soon.
genomic-data-commons tcga gdc
15 days ago by Zhenyu Zhang ★ 1.2k
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1
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1.0k
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Comment: Comment: Method to detect genome doubling
4 weeks ago by Zhenyu Zhang ★ 1.2k
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326
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Comment: Comment: Are GeneExpression Subtype annotations removed from TCGA-GBM?
5 weeks ago by Zhenyu Zhang ★ 1.2k
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212
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Answer: Answer: Human Methylation Infinum Bead - probe to gene mapping
5 weeks ago by Zhenyu Zhang ★ 1.2k
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591
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Answer: Answer: Artificial deletion in bam
6 weeks ago by Zhenyu Zhang ★ 1.2k
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389
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Answer: Answer: Help with finding Genomic coordinates and exon they belong to
6 weeks ago by Zhenyu Zhang ★ 1.2k
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0
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262
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Answer: Answer: Quantify the junction abundance?
6 weeks ago by Zhenyu Zhang ★ 1.2k
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1
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420
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Answer: Answer: lncRNA from TCGA
6 weeks ago by Zhenyu Zhang ★ 1.2k
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348
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Answer: Answer: Can I have multiple active GDC download tokens?
7 weeks ago by Zhenyu Zhang ★ 1.2k
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1
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294
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Answer: Answer: Biobambam vs Picard in RNA Sequencing Analysis for BAM to FASTQ
8 weeks ago by Zhenyu Zhang ★ 1.2k
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0
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323
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Answer: Answer: TCGA clinical data: Multiple measure of response columns in merged clinical xml
9 weeks ago by Zhenyu Zhang ★ 1.2k
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0
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200
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Forum: What other data types and pipelines you would like to see from the Genomics Data Commons (GDC)
gdc tcga genomics-data-commons
updated 11 weeks ago by 43k • written 11 weeks ago by ★ 1.2k
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2
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1.5k
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Answer: Answer: Novel sparse optimisation for high accuracy cancer classification on the 33-canc
11 weeks ago by Zhenyu Zhang ★ 1.2k
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1
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337
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Answer: Answer: TCGA metadata intersection
12 weeks ago by Zhenyu Zhang ★ 1.2k
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245
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Comment: Comment: How to map CPTAC digital pathology slides to sample ID and metadata
12 weeks ago by Zhenyu Zhang ★ 1.2k
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0
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338
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Answer: Answer: How to find clinical data for TARGET AML
12 weeks ago by Zhenyu Zhang ★ 1.2k
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0
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512
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Comment: Comment: How to identify biallelic mutations called using WES data?
12 weeks ago by Zhenyu Zhang ★ 1.2k
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739
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Comment: Comment: TCGA Biospecimens Slides Extraction
12 weeks ago by Zhenyu Zhang ★ 1.2k
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1
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739
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Comment: Comment: TCGA Biospecimens Slides Extraction
3 months ago by Zhenyu Zhang ★ 1.2k
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1
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739
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Comment: Comment: TCGA Biospecimens Slides Extraction
3 months ago by Zhenyu Zhang ★ 1.2k
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1
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414
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Comment: Comment: Normalization of combined normal and tumor tissue samples from GTEx and TCGA pri
3 months ago by Zhenyu Zhang ★ 1.2k
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1
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571
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Answer: Answer: How to find out sample type information of '.rna_seq.augmented_star_gene_counts.
3 months ago by Zhenyu Zhang ★ 1.2k
1
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1
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507
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Comment: Comment: Should centering and scaling be done on methylation beta values for principal co
3 months ago by Zhenyu Zhang ★ 1.2k
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0
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976
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Comment: Comment: Is it possible to access the code of a bioinformatics article?
3 months ago by Zhenyu Zhang ★ 1.2k
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1
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976
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Answer: Answer: Is it possible to access the code of a bioinformatics article?
3 months ago by Zhenyu Zhang ★ 1.2k
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0
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743
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Comment: Comment: Manhattan Plot
3 months ago by Zhenyu Zhang ★ 1.2k
1
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0
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485
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Comment: Comment: Is it possible to bulk-download gene expression + methylation data for a specifi
3 months ago by Zhenyu Zhang ★ 1.2k
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0
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815
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Comment: Comment: Correlate number of cells with gene expression of one gene in scRNA Seq
4 months ago by Zhenyu Zhang ★ 1.2k
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1
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815
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Comment: Comment: Correlate number of cells with gene expression of one gene in scRNA Seq
4 months ago by Zhenyu Zhang ★ 1.2k
0
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0
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743
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Comment: Comment: Understanding gene level copy number data from TCGAbiolinks
5 months ago by Zhenyu Zhang ★ 1.2k
0
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1
reply
510
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Answer: Answer: Help doing differential expression analysis -experimental design and gProfiler T
5 months ago by Zhenyu Zhang ★ 1.2k
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0
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457
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Answer: Answer: Diferences between TCGAbiolinks and cBioportal
5 months ago by Zhenyu Zhang ★ 1.2k
0
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0
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577
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Comment: Comment: Two days_to_last_followups encountered when conducting Survival Analysis with TC
6 months ago by Zhenyu Zhang ★ 1.2k
0
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0
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497
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Comment: Comment: Appropriate genome reference for converting TCGA VCF files to MAF
6 months ago by Zhenyu Zhang ★ 1.2k
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1
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497
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Comment: Comment: Appropriate genome reference for converting TCGA VCF files to MAF
6 months ago by Zhenyu Zhang ★ 1.2k
1
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0
replies
676
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Comment: Comment: Why are there several gene expression files (for example, miRNA) in TCGA for one
6 months ago by Zhenyu Zhang ★ 1.2k
0
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1
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577
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Comment: Comment: Two days_to_last_followups encountered when conducting Survival Analysis with TC
6 months ago by Zhenyu Zhang ★ 1.2k
0
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1
reply
944
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Comment: Comment: Help locating TCGA data from cbioportal
6 months ago by Zhenyu Zhang ★ 1.2k
2
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1
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676
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Answer: Answer: Why are there several gene expression files (for example, miRNA) in TCGA for one
6 months ago by Zhenyu Zhang ★ 1.2k
1
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0
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897
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Comment: Comment: different sample size between TCGA portal and TCGAbiolinks package
6 months ago by Zhenyu Zhang ★ 1.2k
1
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0
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1.1k
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Comment: Comment: CPTAC data download, transcriptomics
7 months ago by Zhenyu Zhang ★ 1.2k
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0
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634
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Answer: Answer: cptac data download
7 months ago by Zhenyu Zhang ★ 1.2k
2
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0
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1.6k
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Comment: Comment: Can BWA (mem) detect longer deletions?
7 months ago by Zhenyu Zhang ★ 1.2k
251 results • Page 1 of 6
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