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How to install deconstructSigs in R
R
updated 9 days ago by 85k • written 10 days ago by ★ 1.2k
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392
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Comment: Comment: NCI Genomic Data Commons gdc-rnaseq-tool
10 days ago by Zhenyu Zhang ★ 1.2k
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599
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Comment: Comment: merge my own RNA-seq data with TCGA UCSCXena data sets. and proper normalisatio
10 days ago by Zhenyu Zhang ★ 1.2k
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106
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Strelka2 germline variants very different when pairing with different tumors?
germline
11 days ago by Zhenyu Zhang ★ 1.2k
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392
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Answer: Answer: TCGA Methylation Beta and Gene Expression Help
11 days ago by Zhenyu Zhang ★ 1.2k
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372
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Answer: Answer: Converting ICGC ids to TCGA format
11 days ago by Zhenyu Zhang ★ 1.2k
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1
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599
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Answer: Answer: merge my own RNA-seq data with TCGA UCSCXena data sets. and proper normalisatio
11 days ago by Zhenyu Zhang ★ 1.2k
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0
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304
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Answer: Answer: How to get full list of TCGA patients with mutation data
11 days ago by Zhenyu Zhang ★ 1.2k
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1
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392
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Comment: Comment: NCI Genomic Data Commons gdc-rnaseq-tool
11 days ago by Zhenyu Zhang ★ 1.2k
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594
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Comment: Comment: TCGAbiolinks - fewer samples than expected
11 days ago by Zhenyu Zhang ★ 1.2k
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449
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Comment: Comment: How can studies compare microarray datas with rna-seq?
10 weeks ago by Zhenyu Zhang ★ 1.2k
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415
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Answer: Answer: ESTIMATE -tidyestimate package- tumour purity
10 weeks ago by Zhenyu Zhang ★ 1.2k
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465
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Answer: Answer: Methods for calculation of TMB via GENIE/cBioPortal data
11 weeks ago by Zhenyu Zhang ★ 1.2k
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1
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418
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Answer: Answer: Obtaining clinical data from the TCGA data portal
3 months ago by Zhenyu Zhang ★ 1.2k
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1
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388
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Comment: Comment: Not all available files shown in TCGA website.
3 months ago by Zhenyu Zhang ★ 1.2k
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316
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Answer: Answer: Many MAF files in tcga case
3 months ago by Zhenyu Zhang ★ 1.2k
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379
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Answer: Answer: Don't understand three modes of TCGA STAR 2-pass
3 months ago by Zhenyu Zhang ★ 1.2k
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1
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594
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Comment: Comment: TCGAbiolinks - fewer samples than expected
4 months ago by Zhenyu Zhang ★ 1.2k
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0
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350
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Answer: Answer: How to get copy number gain/loss from TCGA gene_level_copy_number
4 months ago by Zhenyu Zhang ★ 1.2k
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425
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Comment: Comment: single cell RNA sequencing and mitochondrial percent
4 months ago by Zhenyu Zhang ★ 1.2k
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458
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Comment: Comment: Strange peaks in normalized FPKM data
4 months ago by Zhenyu Zhang ★ 1.2k
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320
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Answer: Answer: Converting GRCh38 30× 1000G data to GRCh37
4 months ago by Zhenyu Zhang ★ 1.2k
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508
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Comment: Comment: Bulk converting superseded TCGA UUIDs
5 months ago by Zhenyu Zhang ★ 1.2k
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0
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608
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Comment: Comment: Clusters in Differential Gene Expression Data
5 months ago by Zhenyu Zhang ★ 1.2k
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448
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Answer: Answer: How to download BLCA.focal_score_by_genes.txt from GDC
5 months ago by Zhenyu Zhang ★ 1.2k
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735
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Comment: Comment: How do I update the gene names of TCGA data correctly?
5 months ago by Zhenyu Zhang ★ 1.2k
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1
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508
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Answer: Answer: Bulk converting superseded TCGA UUIDs
5 months ago by Zhenyu Zhang ★ 1.2k
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0
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617
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Comment: Comment: How to Convert CNV Data to CNA Format for Reproducing Results with the Padma Pac
5 months ago by Zhenyu Zhang ★ 1.2k
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1
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617
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Comment: Comment: How to Convert CNV Data to CNA Format for Reproducing Results with the Padma Pac
5 months ago by Zhenyu Zhang ★ 1.2k
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0
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534
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Comment: Comment: Where to find old version of GATK best practice
6 months ago by Zhenyu Zhang ★ 1.2k
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534
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Comment: Comment: Where to find old version of GATK best practice
6 months ago by Zhenyu Zhang ★ 1.2k
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4
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534
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Where to find old version of GATK best practice
gatk
6 months ago by Zhenyu Zhang ★ 1.2k
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0
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782
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Comment: Comment: How to handle duplicated genes in TCGA data?
6 months ago by Zhenyu Zhang ★ 1.2k
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497
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Comment: Comment: Genotyping sites with N in reference genome
6 months ago by Zhenyu Zhang ★ 1.2k
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484
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Comment: Comment: Extracting mutation status from MAF files - TCGA
6 months ago by Zhenyu Zhang ★ 1.2k
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512
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Comment: Comment: Obtaining Infinium Methylation450K manifest for hg38
6 months ago by Zhenyu Zhang ★ 1.2k
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0
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368
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Answer: Answer: Nomalization - TCGA, RNA-seq and Microarray
6 months ago by Zhenyu Zhang ★ 1.2k
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1.4k
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Comment: Comment: The GDC Legacy Archive is retiring soon.
6 months ago by Zhenyu Zhang ★ 1.2k
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1
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1.0k
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Comment: Comment: How to access TCGA samples that were treated with a specific drug?
6 months ago by Zhenyu Zhang ★ 1.2k
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2
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1.4k
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News: The GDC Legacy Archive is retiring soon.
genomic-data-commons tcga gdc
6 months ago by Zhenyu Zhang ★ 1.2k
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1
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1.2k
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Comment: Comment: Method to detect genome doubling
7 months ago by Zhenyu Zhang ★ 1.2k
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0
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458
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Comment: Comment: Are GeneExpression Subtype annotations removed from TCGA-GBM?
7 months ago by Zhenyu Zhang ★ 1.2k
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0
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334
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Answer: Answer: Human Methylation Infinum Bead - probe to gene mapping
7 months ago by Zhenyu Zhang ★ 1.2k
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0
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850
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Answer: Answer: Artificial deletion in bam
7 months ago by Zhenyu Zhang ★ 1.2k
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531
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Answer: Answer: Help with finding Genomic coordinates and exon they belong to
7 months ago by Zhenyu Zhang ★ 1.2k
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374
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Answer: Answer: Quantify the junction abundance?
7 months ago by Zhenyu Zhang ★ 1.2k
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1
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578
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Answer: Answer: lncRNA from TCGA
7 months ago by Zhenyu Zhang ★ 1.2k
2
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0
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527
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Answer: Answer: Can I have multiple active GDC download tokens?
7 months ago by Zhenyu Zhang ★ 1.2k
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1
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459
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Answer: Answer: Biobambam vs Picard in RNA Sequencing Analysis for BAM to FASTQ
8 months ago by Zhenyu Zhang ★ 1.2k
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0
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449
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Answer: Answer: TCGA clinical data: Multiple measure of response columns in merged clinical xml
8 months ago by Zhenyu Zhang ★ 1.2k
283 results • Page 1 of 6
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