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Comment: Comment: Data Integrity (NCBI SRA and TCGA)
5 days ago by Zhenyu Zhang ★ 1.2k
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325
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Comment: Comment: Reference Genome with decoy for RNAseq data processing
5 weeks ago by Zhenyu Zhang ★ 1.2k
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39k
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Answer: Answer: Convert between RefSeq and Ensembl Transcript?
updated 8 weeks ago by 45k • written 9 weeks ago by ★ 1.2k
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566
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Comment: Comment: Which data to choose for correlation examination
10 weeks ago by Zhenyu Zhang ★ 1.2k
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566
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Comment: Comment: Which data to choose for correlation examination
10 weeks ago by Zhenyu Zhang ★ 1.2k
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1.1k
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Comment: Comment: How to get Normal Samples from TCGA?
10 weeks ago by Zhenyu Zhang ★ 1.2k
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474
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Comment: Comment: Does TCGA data only use host reads to make pre-processed data (CNV, Mutations st
10 weeks ago by Zhenyu Zhang ★ 1.2k
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676
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Answer: Answer: Interpreting Varied Survival Times in TCGA-BRCA Data
10 weeks ago by Zhenyu Zhang ★ 1.2k
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0
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913
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Answer: Answer: Does anyone know how to transform the following transcript ID's from TCGA isofor
10 weeks ago by Zhenyu Zhang ★ 1.2k
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1
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566
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Answer: Answer: Which data to choose for correlation examination
3 months ago by Zhenyu Zhang ★ 1.2k
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0
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687
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Comment: Comment: Getting an Expression Matrix from GDC Manifest File
3 months ago by Zhenyu Zhang ★ 1.2k
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842
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Comment: Comment: Calculating TMB for TCGA data
3 months ago by Zhenyu Zhang ★ 1.2k
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1
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687
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Answer: Answer: Getting an Expression Matrix from GDC Manifest File
4 months ago by Zhenyu Zhang ★ 1.2k
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2
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842
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Answer: Answer: Calculating TMB for TCGA data
4 months ago by Zhenyu Zhang ★ 1.2k
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1
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810
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Answer: Answer: Is It Possible to Calculate Microsatellite Instability (MSI) Directly from MAF F
4 months ago by Zhenyu Zhang ★ 1.2k
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2
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744
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How to install deconstructSigs in R
R
updated 4 months ago by 87k • written 4 months ago by ★ 1.2k
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1
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616
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Comment: Comment: NCI Genomic Data Commons gdc-rnaseq-tool
4 months ago by Zhenyu Zhang ★ 1.2k
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1
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985
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Comment: Comment: merge my own RNA-seq data with TCGA UCSCXena data sets. and proper normalisatio
4 months ago by Zhenyu Zhang ★ 1.2k
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175
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Strelka2 germline variants very different when pairing with different tumors?
germline
4 months ago by Zhenyu Zhang ★ 1.2k
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658
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Answer: Answer: TCGA Methylation Beta and Gene Expression Help
4 months ago by Zhenyu Zhang ★ 1.2k
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0
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619
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Answer: Answer: Converting ICGC ids to TCGA format
4 months ago by Zhenyu Zhang ★ 1.2k
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1
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985
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Answer: Answer: merge my own RNA-seq data with TCGA UCSCXena data sets. and proper normalisatio
4 months ago by Zhenyu Zhang ★ 1.2k
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0
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430
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Answer: Answer: How to get full list of TCGA patients with mutation data
4 months ago by Zhenyu Zhang ★ 1.2k
1
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1
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616
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Comment: Comment: NCI Genomic Data Commons gdc-rnaseq-tool
4 months ago by Zhenyu Zhang ★ 1.2k
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0
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851
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Comment: Comment: TCGAbiolinks - fewer samples than expected
4 months ago by Zhenyu Zhang ★ 1.2k
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665
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Comment: Comment: How can studies compare microarray datas with rna-seq?
6 months ago by Zhenyu Zhang ★ 1.2k
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1
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572
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Answer: Answer: ESTIMATE -tidyestimate package- tumour purity
6 months ago by Zhenyu Zhang ★ 1.2k
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0
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628
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Answer: Answer: Methods for calculation of TMB via GENIE/cBioPortal data
6 months ago by Zhenyu Zhang ★ 1.2k
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1
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638
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Answer: Answer: Obtaining clinical data from the TCGA data portal
7 months ago by Zhenyu Zhang ★ 1.2k
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1
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595
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Comment: Comment: Not all available files shown in TCGA website.
7 months ago by Zhenyu Zhang ★ 1.2k
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455
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Answer: Answer: Many MAF files in tcga case
8 months ago by Zhenyu Zhang ★ 1.2k
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539
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Answer: Answer: Don't understand three modes of TCGA STAR 2-pass
8 months ago by Zhenyu Zhang ★ 1.2k
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1
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851
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Comment: Comment: TCGAbiolinks - fewer samples than expected
8 months ago by Zhenyu Zhang ★ 1.2k
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0
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478
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Answer: Answer: How to get copy number gain/loss from TCGA gene_level_copy_number
8 months ago by Zhenyu Zhang ★ 1.2k
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0
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655
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Comment: Comment: single cell RNA sequencing and mitochondrial percent
9 months ago by Zhenyu Zhang ★ 1.2k
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0
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648
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Comment: Comment: Strange peaks in normalized FPKM data
9 months ago by Zhenyu Zhang ★ 1.2k
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0
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493
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Answer: Answer: Converting GRCh38 30× 1000G data to GRCh37
9 months ago by Zhenyu Zhang ★ 1.2k
0
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0
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727
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Comment: Comment: Bulk converting superseded TCGA UUIDs
9 months ago by Zhenyu Zhang ★ 1.2k
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0
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800
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Comment: Comment: Clusters in Differential Gene Expression Data
9 months ago by Zhenyu Zhang ★ 1.2k
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0
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622
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Answer: Answer: How to download BLCA.focal_score_by_genes.txt from GDC
9 months ago by Zhenyu Zhang ★ 1.2k
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0
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1.1k
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Comment: Comment: How do I update the gene names of TCGA data correctly?
9 months ago by Zhenyu Zhang ★ 1.2k
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1
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727
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Answer: Answer: Bulk converting superseded TCGA UUIDs
9 months ago by Zhenyu Zhang ★ 1.2k
0
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0
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907
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Comment: Comment: How to Convert CNV Data to CNA Format for Reproducing Results with the Padma Pac
9 months ago by Zhenyu Zhang ★ 1.2k
1
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1
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907
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Comment: Comment: How to Convert CNV Data to CNA Format for Reproducing Results with the Padma Pac
10 months ago by Zhenyu Zhang ★ 1.2k
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0
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728
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Comment: Comment: Where to find old version of GATK best practice
10 months ago by Zhenyu Zhang ★ 1.2k
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0
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728
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Comment: Comment: Where to find old version of GATK best practice
10 months ago by Zhenyu Zhang ★ 1.2k
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4
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728
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Where to find old version of GATK best practice
gatk
10 months ago by Zhenyu Zhang ★ 1.2k
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0
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1.2k
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Comment: Comment: How to handle duplicated genes in TCGA data?
10 months ago by Zhenyu Zhang ★ 1.2k
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0
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662
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Comment: Comment: Genotyping sites with N in reference genome
10 months ago by Zhenyu Zhang ★ 1.2k
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0
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633
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Comment: Comment: Extracting mutation status from MAF files - TCGA
10 months ago by Zhenyu Zhang ★ 1.2k
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