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Comment: Comment: Obtaining Infinium Methylation450K manifest for hg38
11 months ago by Zhenyu Zhang ★ 1.2k
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472
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Answer: Answer: Nomalization - TCGA, RNA-seq and Microarray
11 months ago by Zhenyu Zhang ★ 1.2k
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0
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1.6k
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Comment: Comment: The GDC Legacy Archive is retiring soon.
11 months ago by Zhenyu Zhang ★ 1.2k
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1
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1.4k
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Comment: Comment: How to access TCGA samples that were treated with a specific drug?
11 months ago by Zhenyu Zhang ★ 1.2k
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2
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1.6k
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News: The GDC Legacy Archive is retiring soon.
genomic-data-commons tcga gdc
11 months ago by Zhenyu Zhang ★ 1.2k
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1
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1.4k
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Comment: Comment: Method to detect genome doubling
11 months ago by Zhenyu Zhang ★ 1.2k
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0
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579
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Comment: Comment: Are GeneExpression Subtype annotations removed from TCGA-GBM?
12 months ago by Zhenyu Zhang ★ 1.2k
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448
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Answer: Answer: Human Methylation Infinum Bead - probe to gene mapping
12 months ago by Zhenyu Zhang ★ 1.2k
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0
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1.1k
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Answer: Answer: Artificial deletion in bam
12 months ago by Zhenyu Zhang ★ 1.2k
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0
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648
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Answer: Answer: Help with finding Genomic coordinates and exon they belong to
12 months ago by Zhenyu Zhang ★ 1.2k
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0
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476
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Answer: Answer: Quantify the junction abundance?
12 months ago by Zhenyu Zhang ★ 1.2k
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1
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723
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Answer: Answer: lncRNA from TCGA
12 months ago by Zhenyu Zhang ★ 1.2k
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647
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Answer: Answer: Can I have multiple active GDC download tokens?
12 months ago by Zhenyu Zhang ★ 1.2k
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1
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613
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Answer: Answer: Biobambam vs Picard in RNA Sequencing Analysis for BAM to FASTQ
12 months ago by Zhenyu Zhang ★ 1.2k
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0
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593
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Answer: Answer: TCGA clinical data: Multiple measure of response columns in merged clinical xml
13 months ago by Zhenyu Zhang ★ 1.2k
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0
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401
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Forum: What other data types and pipelines you would like to see from the Genomics Data Commons (GDC)
gdc tcga genomics-data-commons
updated 13 months ago by 45k • written 13 months ago by ★ 1.2k
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2
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2.6k
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Answer: Answer: Novel sparse optimisation for high accuracy cancer classification on the 33-canc
13 months ago by Zhenyu Zhang ★ 1.2k
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1
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737
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Answer: Answer: TCGA metadata intersection
13 months ago by Zhenyu Zhang ★ 1.2k
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0
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500
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Comment: Comment: How to map CPTAC digital pathology slides to sample ID and metadata
13 months ago by Zhenyu Zhang ★ 1.2k
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0
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585
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Answer: Answer: How to find clinical data for TARGET AML
13 months ago by Zhenyu Zhang ★ 1.2k
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0
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1.2k
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Comment: Comment: How to identify biallelic mutations called using WES data?
13 months ago by Zhenyu Zhang ★ 1.2k
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0
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1.3k
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Comment: Comment: TCGA Biospecimens Slides Extraction
13 months ago by Zhenyu Zhang ★ 1.2k
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1
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1.3k
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Comment: Comment: TCGA Biospecimens Slides Extraction
13 months ago by Zhenyu Zhang ★ 1.2k
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1
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1.3k
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Comment: Comment: TCGA Biospecimens Slides Extraction
13 months ago by Zhenyu Zhang ★ 1.2k
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1
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853
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Comment: Comment: Normalization of combined normal and tumor tissue samples from GTEx and TCGA pri
14 months ago by Zhenyu Zhang ★ 1.2k
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1
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906
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Answer: Answer: How to find out sample type information of '.rna_seq.augmented_star_gene_counts.
14 months ago by Zhenyu Zhang ★ 1.2k
1
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1
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886
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Comment: Comment: Should centering and scaling be done on methylation beta values for principal co
14 months ago by Zhenyu Zhang ★ 1.2k
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0
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2.1k
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Comment: Comment: Is it possible to access the code of a bioinformatics article?
14 months ago by Zhenyu Zhang ★ 1.2k
1
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1
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2.1k
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Answer: Answer: Is it possible to access the code of a bioinformatics article?
14 months ago by Zhenyu Zhang ★ 1.2k
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0
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1.3k
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Comment: Comment: Manhattan Plot
14 months ago by Zhenyu Zhang ★ 1.2k
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0
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776
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Comment: Comment: Is it possible to bulk-download gene expression + methylation data for a specifi
14 months ago by Zhenyu Zhang ★ 1.2k
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0
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1.5k
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Comment: Comment: Correlate number of cells with gene expression of one gene in scRNA Seq
15 months ago by Zhenyu Zhang ★ 1.2k
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1
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1.5k
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Comment: Comment: Correlate number of cells with gene expression of one gene in scRNA Seq
15 months ago by Zhenyu Zhang ★ 1.2k
0
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0
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1.3k
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Comment: Comment: Understanding gene level copy number data from TCGAbiolinks
16 months ago by Zhenyu Zhang ★ 1.2k
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1
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863
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Answer: Answer: Help doing differential expression analysis -experimental design and gProfiler T
16 months ago by Zhenyu Zhang ★ 1.2k
0
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0
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838
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Answer: Answer: Diferences between TCGAbiolinks and cBioportal
16 months ago by Zhenyu Zhang ★ 1.2k
0
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0
replies
917
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Comment: Comment: Two days_to_last_followups encountered when conducting Survival Analysis with TC
17 months ago by Zhenyu Zhang ★ 1.2k
0
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0
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798
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Comment: Comment: Appropriate genome reference for converting TCGA VCF files to MAF
17 months ago by Zhenyu Zhang ★ 1.2k
0
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1
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798
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Comment: Comment: Appropriate genome reference for converting TCGA VCF files to MAF
17 months ago by Zhenyu Zhang ★ 1.2k
1
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0
replies
1.0k
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Comment: Comment: Why are there several gene expression files (for example, miRNA) in TCGA for one
17 months ago by Zhenyu Zhang ★ 1.2k
0
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1
reply
917
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Comment: Comment: Two days_to_last_followups encountered when conducting Survival Analysis with TC
17 months ago by Zhenyu Zhang ★ 1.2k
0
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1
reply
1.5k
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Comment: Comment: Help locating TCGA data from cbioportal
17 months ago by Zhenyu Zhang ★ 1.2k
2
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1
reply
1.0k
views
Answer: Answer: Why are there several gene expression files (for example, miRNA) in TCGA for one
17 months ago by Zhenyu Zhang ★ 1.2k
1
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0
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1.4k
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Comment: Comment: different sample size between TCGA portal and TCGAbiolinks package
17 months ago by Zhenyu Zhang ★ 1.2k
1
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0
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1.5k
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Comment: Comment: CPTAC data download, transcriptomics
18 months ago by Zhenyu Zhang ★ 1.2k
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0
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900
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Answer: Answer: cptac data download
18 months ago by Zhenyu Zhang ★ 1.2k
2
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0
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2.6k
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Comment: Comment: Can BWA (mem) detect longer deletions?
18 months ago by Zhenyu Zhang ★ 1.2k
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0
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1.7k
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Comment: Comment: How does one access TCGA controlled data in AWS S3?
18 months ago by Zhenyu Zhang ★ 1.2k
0
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1
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1.7k
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Comment: Comment: How does one access TCGA controlled data in AWS S3?
18 months ago by Zhenyu Zhang ★ 1.2k
0
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1
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1.4k
views
Answer: Answer: different sample size between TCGA portal and TCGAbiolinks package
18 months ago by Zhenyu Zhang ★ 1.2k
298 results • Page 2 of 6
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