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Answer: Answer: Can I have multiple active GDC download tokens?
8 months ago by Zhenyu Zhang ★ 1.2k
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465
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Answer: Answer: Biobambam vs Picard in RNA Sequencing Analysis for BAM to FASTQ
8 months ago by Zhenyu Zhang ★ 1.2k
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453
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Answer: Answer: TCGA clinical data: Multiple measure of response columns in merged clinical xml
8 months ago by Zhenyu Zhang ★ 1.2k
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318
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Forum: What other data types and pipelines you would like to see from the Genomics Data Commons (GDC)
gdc tcga genomics-data-commons
updated 8 months ago by 44k • written 8 months ago by ★ 1.2k
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2
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2.0k
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Answer: Answer: Novel sparse optimisation for high accuracy cancer classification on the 33-canc
9 months ago by Zhenyu Zhang ★ 1.2k
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1
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526
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Answer: Answer: TCGA metadata intersection
9 months ago by Zhenyu Zhang ★ 1.2k
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386
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Comment: Comment: How to map CPTAC digital pathology slides to sample ID and metadata
9 months ago by Zhenyu Zhang ★ 1.2k
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465
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Answer: Answer: How to find clinical data for TARGET AML
9 months ago by Zhenyu Zhang ★ 1.2k
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879
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Comment: Comment: How to identify biallelic mutations called using WES data?
9 months ago by Zhenyu Zhang ★ 1.2k
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1.1k
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Comment: Comment: TCGA Biospecimens Slides Extraction
9 months ago by Zhenyu Zhang ★ 1.2k
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1
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1.1k
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Comment: Comment: TCGA Biospecimens Slides Extraction
9 months ago by Zhenyu Zhang ★ 1.2k
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1
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1.1k
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Comment: Comment: TCGA Biospecimens Slides Extraction
9 months ago by Zhenyu Zhang ★ 1.2k
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1
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636
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Comment: Comment: Normalization of combined normal and tumor tissue samples from GTEx and TCGA pri
9 months ago by Zhenyu Zhang ★ 1.2k
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1
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750
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Answer: Answer: How to find out sample type information of '.rna_seq.augmented_star_gene_counts.
10 months ago by Zhenyu Zhang ★ 1.2k
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1
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715
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Comment: Comment: Should centering and scaling be done on methylation beta values for principal co
10 months ago by Zhenyu Zhang ★ 1.2k
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1.5k
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Comment: Comment: Is it possible to access the code of a bioinformatics article?
10 months ago by Zhenyu Zhang ★ 1.2k
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1
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1.5k
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Answer: Answer: Is it possible to access the code of a bioinformatics article?
10 months ago by Zhenyu Zhang ★ 1.2k
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1.0k
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Comment: Comment: Manhattan Plot
10 months ago by Zhenyu Zhang ★ 1.2k
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637
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Comment: Comment: Is it possible to bulk-download gene expression + methylation data for a specifi
10 months ago by Zhenyu Zhang ★ 1.2k
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1.2k
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Comment: Comment: Correlate number of cells with gene expression of one gene in scRNA Seq
10 months ago by Zhenyu Zhang ★ 1.2k
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1
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1.2k
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Comment: Comment: Correlate number of cells with gene expression of one gene in scRNA Seq
10 months ago by Zhenyu Zhang ★ 1.2k
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0
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1.0k
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Comment: Comment: Understanding gene level copy number data from TCGAbiolinks
11 months ago by Zhenyu Zhang ★ 1.2k
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1
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682
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Answer: Answer: Help doing differential expression analysis -experimental design and gProfiler T
12 months ago by Zhenyu Zhang ★ 1.2k
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0
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649
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Answer: Answer: Diferences between TCGAbiolinks and cBioportal
12 months ago by Zhenyu Zhang ★ 1.2k
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0
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752
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Comment: Comment: Two days_to_last_followups encountered when conducting Survival Analysis with TC
12 months ago by Zhenyu Zhang ★ 1.2k
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0
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674
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Comment: Comment: Appropriate genome reference for converting TCGA VCF files to MAF
12 months ago by Zhenyu Zhang ★ 1.2k
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1
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674
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Comment: Comment: Appropriate genome reference for converting TCGA VCF files to MAF
12 months ago by Zhenyu Zhang ★ 1.2k
1
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0
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847
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Comment: Comment: Why are there several gene expression files (for example, miRNA) in TCGA for one
12 months ago by Zhenyu Zhang ★ 1.2k
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1
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752
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Comment: Comment: Two days_to_last_followups encountered when conducting Survival Analysis with TC
12 months ago by Zhenyu Zhang ★ 1.2k
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1
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1.2k
views
Comment: Comment: Help locating TCGA data from cbioportal
12 months ago by Zhenyu Zhang ★ 1.2k
2
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1
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847
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Answer: Answer: Why are there several gene expression files (for example, miRNA) in TCGA for one
12 months ago by Zhenyu Zhang ★ 1.2k
1
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0
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1.1k
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Comment: Comment: different sample size between TCGA portal and TCGAbiolinks package
13 months ago by Zhenyu Zhang ★ 1.2k
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0
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1.3k
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Comment: Comment: CPTAC data download, transcriptomics
13 months ago by Zhenyu Zhang ★ 1.2k
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0
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754
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Answer: Answer: cptac data download
13 months ago by Zhenyu Zhang ★ 1.2k
2
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2.2k
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Comment: Comment: Can BWA (mem) detect longer deletions?
13 months ago by Zhenyu Zhang ★ 1.2k
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0
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1.4k
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Comment: Comment: How does one access TCGA controlled data in AWS S3?
13 months ago by Zhenyu Zhang ★ 1.2k
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1
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1.4k
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Comment: Comment: How does one access TCGA controlled data in AWS S3?
13 months ago by Zhenyu Zhang ★ 1.2k
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1
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1.1k
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Answer: Answer: different sample size between TCGA portal and TCGAbiolinks package
13 months ago by Zhenyu Zhang ★ 1.2k
0
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2
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1.4k
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Comment: Comment: How does one access TCGA controlled data in AWS S3?
13 months ago by Zhenyu Zhang ★ 1.2k
2
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1
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8.8k
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Answer: Answer: Macbook M1 pro/M2 pro or Dell (with Ubuntu/other linux distribution) for bioinfo
13 months ago by Zhenyu Zhang ★ 1.2k
0
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0
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651
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Answer: Answer: Problems encountered during the survival analysis with TCGA data
13 months ago by Zhenyu Zhang ★ 1.2k
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0
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818
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Comment: Comment: TPM RNA-seq data for differential expression analysis
13 months ago by Zhenyu Zhang ★ 1.2k
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0
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533
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Comment: Comment: Comparing multiple RNASeq studies
14 months ago by Zhenyu Zhang ★ 1.2k
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1
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1.5k
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Comment: Comment: Calculation of TMB on gene level
14 months ago by Zhenyu Zhang ★ 1.2k
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0
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635
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Comment: Comment: Understanding TCGA barcodes with dot in the fieldname
14 months ago by Zhenyu Zhang ★ 1.2k
1
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0
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943
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Answer: Answer: How to DESeq2 using miRNA data obtained using TCGAbiolinks
14 months ago by Zhenyu Zhang ★ 1.2k
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0
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947
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Comment: Comment: CNV calling
14 months ago by Zhenyu Zhang ★ 1.2k
1
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1
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3.8k
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Answer: Answer: What is the amount of sequencing data produced annually?
14 months ago by Zhenyu Zhang ★ 1.2k
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0
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979
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Comment: Comment: Is a PON necessary for tumor-normal matched Mutect2?
14 months ago by Zhenyu Zhang ★ 1.2k
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0
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695
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Comment: Comment: TCGA gene expression quantitation batch information
14 months ago by Zhenyu Zhang ★ 1.2k
286 results • Page 2 of 6
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