Profile Posts Awards
Show
all questions tools blogs news tutorials forum answers comments
0
votes
0
replies
677
views
Answer: Answer: What gene annotation was used for PanCanAtlas EBPlusPlus-corrected RNA-seq TCGA
14 months ago by Zhenyu Zhang ★ 1.2k
0
votes
1
reply
979
views
Comment: Comment: Is a PON necessary for tumor-normal matched Mutect2?
14 months ago by Zhenyu Zhang ★ 1.2k
1
vote
0
replies
1.1k
views
Answer: Answer: Grouping TCGA samples by tumor_tissue_site: Can some groups be merged to decreas
15 months ago by Zhenyu Zhang ★ 1.2k
0
votes
0
replies
659
views
Comment: Comment: Differential gene expression with specif genes of interest
15 months ago by Zhenyu Zhang ★ 1.2k
1
vote
0
replies
1.4k
views
Comment: Comment: What database would have a list of gene names and aliases for yeast?
15 months ago by Zhenyu Zhang ★ 1.2k
1
vote
0
replies
956
views
Answer: Answer: Batch correction of TCGA data from TCGAbiolinks and cBioPortal
15 months ago by Zhenyu Zhang ★ 1.2k
0
votes
1
reply
2.0k
views
Comment: Comment: Merge BAM files from (totally) different references
15 months ago by Zhenyu Zhang ★ 1.2k
0
votes
0
replies
1.4k
views
Answer: Answer: QC Illumina EPIC array: Removing SNPs at CpG sites
15 months ago by Zhenyu Zhang ★ 1.2k
0
votes
1
reply
1.3k
views
Answer: Answer: Number of genes covered in WES
16 months ago by Zhenyu Zhang ★ 1.2k
1
vote
1
reply
1.8k
views
Answer: Answer: DNBseq vs Illumina
16 months ago by Zhenyu Zhang ★ 1.2k
2
votes
0
replies
806
views
Answer: Answer: Maf File Bar Code
16 months ago by Zhenyu Zhang ★ 1.2k
0
votes
1
reply
1.0k
views
Answer: Answer: Ensembl Ref/alt allele discrepancy
16 months ago by Zhenyu Zhang ★ 1.2k
0
votes
0
replies
883
views
Comment: Comment: Is it possible to interpret HGVS without transcript version number?
16 months ago by Zhenyu Zhang ★ 1.2k
1
vote
1
reply
1.1k
views
Comment: Comment: Grouping TCGA samples by tumor_tissue_site: Can some groups be merged to decreas
16 months ago by Zhenyu Zhang ★ 1.2k
3
votes
1
reply
726
views
Comment: Comment: Send BAM files from server to cluster
16 months ago by Zhenyu Zhang ★ 1.2k
0
votes
0
replies
1.9k
views
Answer: Answer: Convert files made for b37 into hg19 human reference?
16 months ago by Zhenyu Zhang ★ 1.2k
0
votes
0
replies
983
views
Comment: Comment: PON and germline files for Mutect2 Tumor-only mode
16 months ago by Zhenyu Zhang ★ 1.2k
0
votes
0
replies
1.8k
views
Comment: Comment: How can I generate a list of 100 genomic intervals from bam files?
16 months ago by Zhenyu Zhang ★ 1.2k
0
votes
0
replies
1.3k
views
Answer: Answer: Methylation Analysis - Missing Chromosome and Position Information for some CpG
16 months ago by Zhenyu Zhang ★ 1.2k
1
vote
0
replies
650
views
Comment: Comment: Is it ok to do Indel realignment after removing subsets of reads?
16 months ago by Zhenyu Zhang ★ 1.2k
0
votes
0
replies
1.4k
views
Comment: Comment: Can I liftover hs37d5 to hg38 using hg19ToHg38 chain file?
16 months ago by Zhenyu Zhang ★ 1.2k
2
votes
1
reply
650
views
Answer: Answer: Is it ok to do Indel realignment after removing subsets of reads?
16 months ago by Zhenyu Zhang ★ 1.2k
0
votes
1
reply
1.1k
views
Comment: Comment: cBioPortal data with negative log2(FPKM + 1) values
16 months ago by Zhenyu Zhang ★ 1.2k
0
votes
1
reply
4.5k
views
Answer: Answer: RNA-Seq analysis with Python
16 months ago by Zhenyu Zhang ★ 1.2k
1
vote
1
reply
1.4k
views
Answer: Answer: Can I liftover hs37d5 to hg38 using hg19ToHg38 chain file?
16 months ago by Zhenyu Zhang ★ 1.2k
1
vote
1
reply
2.1k
views
Answer: Answer: laptop or PC for the bioinformatics jobs -- specification
17 months ago by Zhenyu Zhang ★ 1.2k
0
votes
1
reply
935
views
Answer: Answer: Log-transformation of small values with good fold change and P values
17 months ago by Zhenyu Zhang ★ 1.2k
0
votes
1
reply
1.1k
views
Answer: Answer: cBioPortal data with negative log2(FPKM + 1) values
17 months ago by Zhenyu Zhang ★ 1.2k
0
votes
1
reply
606
views
Answer: Answer: Multiple Tumor Count Files from a single Patient. How to merge or select?
17 months ago by Zhenyu Zhang ★ 1.2k
0
votes
0
replies
960
views
Answer: Answer: TCGA methylation data analysis
17 months ago by Zhenyu Zhang ★ 1.2k
1
vote
0
replies
1.8k
views
Comment: Comment: Where can I find a good RNA-seq dataset on cancer?
17 months ago by Zhenyu Zhang ★ 1.2k
0
votes
2
replies
1.8k
views
Comment: Comment: Where can I find a good RNA-seq dataset on cancer?
17 months ago by Zhenyu Zhang ★ 1.2k
0
votes
0
replies
547
views
Answer: Answer: Why sone miRNAs are not present in TCGA data
17 months ago by Zhenyu Zhang ★ 1.2k
0
votes
1
reply
1.8k
views
Answer: Answer: Where can I find a good RNA-seq dataset on cancer?
17 months ago by Zhenyu Zhang ★ 1.2k
1
vote
0
replies
469
views
Answer: Answer: transcript abundance, control and wgs
17 months ago by Zhenyu Zhang ★ 1.2k
0
votes
0
replies
587
views
Answer: Answer: Annotation of gene expression TCGA data
17 months ago by Zhenyu Zhang ★ 1.2k
0
votes
0
replies
898
views
Comment: Comment: Where to get the molecular subtype information of STAD sample in TCGA
17 months ago by Zhenyu Zhang ★ 1.2k
0
votes
0
replies
1.6k
views
Answer: Answer: A question about the raw RNA-seq processing workflow
17 months ago by Zhenyu Zhang ★ 1.2k
0
votes
1
reply
1.5k
views
Comment: Comment: How to deal with duplicated gene IDs in TCGA RNA expression data?
18 months ago by Zhenyu Zhang ★ 1.2k
0
votes
0
replies
622
views
Answer: Answer: How to download data for a specific time period in GDC portal?
18 months ago by Zhenyu Zhang ★ 1.2k
1
vote
0
replies
1.1k
views
Answer: Answer: Fast BAM header editing
18 months ago by Zhenyu Zhang ★ 1.2k
0
votes
0
replies
697
views
Answer: Answer: GDC API: Obtain the Objective Power (or Magnification) of a WSI file
18 months ago by Zhenyu Zhang ★ 1.2k
0
votes
0
replies
1.6k
views
Comment: Comment: Matching gene-expression data with clinical data: best practices.
20 months ago by Zhenyu Zhang ★ 1.2k
1
vote
0
replies
782
views
Comment: Comment: Therapy response for multiple cancer types
20 months ago by Zhenyu Zhang ★ 1.2k
0
votes
0
replies
1.5k
views
Comment: Comment: problem for comparing 2 type of annotation file
20 months ago by Zhenyu Zhang ★ 1.2k
0
votes
0
replies
622
views
Answer: Answer: Recent GDC Data Updating Parameters
21 months ago by Zhenyu Zhang ★ 1.2k
1
vote
1
reply
1.2k
views
Comment: Comment: Mapping files to patients in TCGA (RNA-seq)
23 months ago by Zhenyu Zhang ★ 1.2k
0
votes
0
replies
804
views
Answer: Answer: UUIDtoBarcode Renaming of Folders
23 months ago by Zhenyu Zhang ★ 1.2k
0
votes
0
replies
5.1k
views
Answer: Answer: How to get SNP genotypes in somatic mutation files with MAF(Mutation Annotation
23 months ago by Zhenyu Zhang ★ 1.2k
0
votes
0
replies
1.7k
views
Answer: Answer: TCGA RNA Quantification
23 months ago by Zhenyu Zhang ★ 1.2k
286 results • Page 3 of 6
Content Search
Users
Tags
Badges
Help About
FAQ
Access RSS
API
Stats

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.

Powered by the version 2.3.6