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Comment: Comment: How does one access TCGA controlled data in AWS S3?
20 months ago by Zhenyu Zhang ★ 1.3k
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1.9k
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Comment: Comment: How does one access TCGA controlled data in AWS S3?
20 months ago by Zhenyu Zhang ★ 1.3k
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1
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1.5k
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Answer: Answer: different sample size between TCGA portal and TCGAbiolinks package
20 months ago by Zhenyu Zhang ★ 1.3k
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2
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1.9k
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Comment: Comment: How does one access TCGA controlled data in AWS S3?
20 months ago by Zhenyu Zhang ★ 1.3k
2
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1
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13k
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Answer: Answer: Macbook M1 pro/M2 pro or Dell (with Ubuntu/other linux distribution) for bioinfo
20 months ago by Zhenyu Zhang ★ 1.3k
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783
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Answer: Answer: Problems encountered during the survival analysis with TCGA data
20 months ago by Zhenyu Zhang ★ 1.3k
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990
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Comment: Comment: TPM RNA-seq data for differential expression analysis
20 months ago by Zhenyu Zhang ★ 1.3k
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646
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Comment: Comment: Comparing multiple RNASeq studies
20 months ago by Zhenyu Zhang ★ 1.3k
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1
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1.9k
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Comment: Comment: Calculation of TMB on gene level
20 months ago by Zhenyu Zhang ★ 1.3k
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775
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Comment: Comment: Understanding TCGA barcodes with dot in the fieldname
20 months ago by Zhenyu Zhang ★ 1.3k
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1.2k
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Answer: Answer: How to DESeq2 using miRNA data obtained using TCGAbiolinks
21 months ago by Zhenyu Zhang ★ 1.3k
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1.2k
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Comment: Comment: CNV calling
21 months ago by Zhenyu Zhang ★ 1.3k
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6.9k
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Answer: Answer: What is the amount of sequencing data produced annually?
21 months ago by Zhenyu Zhang ★ 1.3k
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1.3k
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Comment: Comment: Is a PON necessary for tumor-normal matched Mutect2?
21 months ago by Zhenyu Zhang ★ 1.3k
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853
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Comment: Comment: TCGA gene expression quantitation batch information
21 months ago by Zhenyu Zhang ★ 1.3k
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0
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853
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Answer: Answer: What gene annotation was used for PanCanAtlas EBPlusPlus-corrected RNA-seq TCGA
21 months ago by Zhenyu Zhang ★ 1.3k
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1.3k
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Comment: Comment: Is a PON necessary for tumor-normal matched Mutect2?
21 months ago by Zhenyu Zhang ★ 1.3k
1
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0
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1.3k
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Answer: Answer: Grouping TCGA samples by tumor_tissue_site: Can some groups be merged to decreas
22 months ago by Zhenyu Zhang ★ 1.3k
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0
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829
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Comment: Comment: Differential gene expression with specif genes of interest
22 months ago by Zhenyu Zhang ★ 1.3k
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2.0k
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Comment: Comment: What database would have a list of gene names and aliases for yeast?
22 months ago by Zhenyu Zhang ★ 1.3k
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0
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1.2k
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Answer: Answer: Batch correction of TCGA data from TCGAbiolinks and cBioPortal
22 months ago by Zhenyu Zhang ★ 1.3k
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1
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2.8k
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Comment: Comment: Merge BAM files from (totally) different references
22 months ago by Zhenyu Zhang ★ 1.3k
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1.9k
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Answer: Answer: QC Illumina EPIC array: Removing SNPs at CpG sites
22 months ago by Zhenyu Zhang ★ 1.3k
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1
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1.9k
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Answer: Answer: Number of genes covered in WES
22 months ago by Zhenyu Zhang ★ 1.3k
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1
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2.5k
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Answer: Answer: DNBseq vs Illumina
22 months ago by Zhenyu Zhang ★ 1.3k
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1.0k
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Answer: Answer: Maf File Bar Code
22 months ago by Zhenyu Zhang ★ 1.3k
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1
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1.5k
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Answer: Answer: Ensembl Ref/alt allele discrepancy
22 months ago by Zhenyu Zhang ★ 1.3k
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0
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1.2k
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Comment: Comment: Is it possible to interpret HGVS without transcript version number?
22 months ago by Zhenyu Zhang ★ 1.3k
1
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1
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1.3k
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Comment: Comment: Grouping TCGA samples by tumor_tissue_site: Can some groups be merged to decreas
22 months ago by Zhenyu Zhang ★ 1.3k
3
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1
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1.0k
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Comment: Comment: Send BAM files from server to cluster
22 months ago by Zhenyu Zhang ★ 1.3k
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0
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2.6k
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Answer: Answer: Convert files made for b37 into hg19 human reference?
22 months ago by Zhenyu Zhang ★ 1.3k
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1.2k
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Comment: Comment: PON and germline files for Mutect2 Tumor-only mode
22 months ago by Zhenyu Zhang ★ 1.3k
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0
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2.2k
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Comment: Comment: How can I generate a list of 100 genomic intervals from bam files?
22 months ago by Zhenyu Zhang ★ 1.3k
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0
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1.8k
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Answer: Answer: Methylation Analysis - Missing Chromosome and Position Information for some CpG
22 months ago by Zhenyu Zhang ★ 1.3k
1
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0
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821
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Comment: Comment: Is it ok to do Indel realignment after removing subsets of reads?
23 months ago by Zhenyu Zhang ★ 1.3k
0
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0
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2.0k
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Comment: Comment: Can I liftover hs37d5 to hg38 using hg19ToHg38 chain file?
23 months ago by Zhenyu Zhang ★ 1.3k
2
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1
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821
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Answer: Answer: Is it ok to do Indel realignment after removing subsets of reads?
23 months ago by Zhenyu Zhang ★ 1.3k
0
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1
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1.5k
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Comment: Comment: cBioPortal data with negative log2(FPKM + 1) values
23 months ago by Zhenyu Zhang ★ 1.3k
0
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1
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5.9k
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Answer: Answer: RNA-Seq analysis with Python
23 months ago by Zhenyu Zhang ★ 1.3k
1
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1
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2.0k
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Answer: Answer: Can I liftover hs37d5 to hg38 using hg19ToHg38 chain file?
23 months ago by Zhenyu Zhang ★ 1.3k
1
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1
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3.1k
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Answer: Answer: laptop or PC for the bioinformatics jobs -- specification
23 months ago by Zhenyu Zhang ★ 1.3k
0
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1
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1.3k
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Answer: Answer: Log-transformation of small values with good fold change and P values
23 months ago by Zhenyu Zhang ★ 1.3k
0
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1
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1.5k
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Answer: Answer: cBioPortal data with negative log2(FPKM + 1) values
23 months ago by Zhenyu Zhang ★ 1.3k
0
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1
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772
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Answer: Answer: Multiple Tumor Count Files from a single Patient. How to merge or select?
23 months ago by Zhenyu Zhang ★ 1.3k
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0
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1.2k
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Answer: Answer: TCGA methylation data analysis
2.0 years ago by Zhenyu Zhang ★ 1.3k
1
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0
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2.1k
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Comment: Comment: Where can I find a good RNA-seq dataset on cancer?
2.0 years ago by Zhenyu Zhang ★ 1.3k
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2
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2.1k
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Comment: Comment: Where can I find a good RNA-seq dataset on cancer?
2.0 years ago by Zhenyu Zhang ★ 1.3k
0
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0
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684
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Answer: Answer: Why sone miRNAs are not present in TCGA data
2.0 years ago by Zhenyu Zhang ★ 1.3k
0
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1
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2.1k
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Answer: Answer: Where can I find a good RNA-seq dataset on cancer?
2.0 years ago by Zhenyu Zhang ★ 1.3k
1
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0
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601
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Answer: Answer: transcript abundance, control and wgs
2.0 years ago by Zhenyu Zhang ★ 1.3k
301 results • Page 3 of 7
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