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Comment: Comment: how about the proteome profiling ?
23 months ago by Zhenyu Zhang ★ 1.2k
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1.1k
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Answer: Answer: Good practices for RNA-seq (2x50, 2x75, 2x100) aligment with STAR + RSEM
23 months ago by Zhenyu Zhang ★ 1.2k
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764
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Answer: Answer: Search filename in the GDC data portal
23 months ago by Zhenyu Zhang ★ 1.2k
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0
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764
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Answer: Answer: Search filename in the GDC data portal
23 months ago by Zhenyu Zhang ★ 1.2k
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1
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2.0k
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Comment: Comment: how about the proteome profiling ?
2.1 years ago by Zhenyu Zhang ★ 1.2k
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1
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2.0k
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Answer: Answer: how about the proteome profiling ?
2.1 years ago by Zhenyu Zhang ★ 1.2k
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0
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2.6k
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Comment: Comment: Understanding log2 transformation for TPM
2.1 years ago by Zhenyu Zhang ★ 1.2k
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0
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830
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Answer: Answer: TOPMED imputation output SNP with two-base alleles
2.1 years ago by Zhenyu Zhang ★ 1.2k
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1
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2.6k
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Answer: Answer: Understanding log2 transformation for TPM
2.1 years ago by Zhenyu Zhang ★ 1.2k
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0
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2.7k
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Comment: Comment: About normalization of the datasets from Harmonized TCGA data
2.1 years ago by Zhenyu Zhang ★ 1.2k
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0
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2.7k
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Comment: Comment: TCGA library type information
2.1 years ago by Zhenyu Zhang ★ 1.2k
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0
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3.6k
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Comment: Comment: TCGA STAR - Counts, where are estimated counts?
2.1 years ago by Zhenyu Zhang ★ 1.2k
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0
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665
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Answer: Answer: Methylation datasets TCGA
2.1 years ago by Zhenyu Zhang ★ 1.2k
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1.9k
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Answer: Answer: How to pair TCGA bam files with no properly paired reads?
2.1 years ago by Zhenyu Zhang ★ 1.2k
2
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1
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3.6k
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Answer: Answer: TCGA STAR - Counts, where are estimated counts?
2.3 years ago by Zhenyu Zhang ★ 1.2k
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0
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670
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Answer: Answer: How to check fastq file for feature retained from vector construct after RNA-seq
2.3 years ago by Zhenyu Zhang ★ 1.2k
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0
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1.6k
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Answer: Answer: TCGA RNA-Seq data and CLINICAL Data
2.3 years ago by Zhenyu Zhang ★ 1.2k
1
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1
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783
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Answer: Answer: Different types of imagery data available in TCGA
2.3 years ago by Zhenyu Zhang ★ 1.2k
2
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1
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2.7k
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Comment: Comment: About normalization of the datasets from Harmonized TCGA data
2.3 years ago by Zhenyu Zhang ★ 1.2k
3
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0
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982
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Answer: Answer: CPTAC data, download, merge
2.3 years ago by Zhenyu Zhang ★ 1.2k
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5.3k
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Comment: Comment: VEP for cancer annotation using COSMIC
2.3 years ago by Zhenyu Zhang ★ 1.2k
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0
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689
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Answer: Answer: Harmonized RNA-Seq Analysis of Different GDC Queried Projects
2.4 years ago by Zhenyu Zhang ★ 1.2k
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0
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1.4k
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Comment: Comment: RNA Seq HTSeq download GDC portal
2.4 years ago by Zhenyu Zhang ★ 1.2k
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0
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7.9k
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Comment: Comment: TCGA transcriptome data to R (DESeq2)
2.5 years ago by Zhenyu Zhang ★ 1.2k
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1
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7.9k
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Comment: Comment: TCGA transcriptome data to R (DESeq2)
2.6 years ago by Zhenyu Zhang ★ 1.2k
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0
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1.9k
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Comment: Comment: WES data analysis: the rationale behind merging BAM files and marking duplicates
2.6 years ago by Zhenyu Zhang ★ 1.2k
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1
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1.9k
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Comment: Comment: WES data analysis: the rationale behind merging BAM files and marking duplicates
2.6 years ago by Zhenyu Zhang ★ 1.2k
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1
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1.5k
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Comment: Comment: When to merge BAM or SAM files?
2.7 years ago by Zhenyu Zhang ★ 1.2k
2
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8
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4.1k
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Are there any GenomeStudio alternatives to process Illumina genotyping array?
genomestudio genotyping array illumina
2.7 years ago by Zhenyu Zhang ★ 1.2k
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0
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4.1k
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Answer: Answer: Are there any GenomeStudio alternatives to process Illumina genotyping array?
2.7 years ago by Zhenyu Zhang ★ 1.2k
1
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0
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939
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Comment: Comment: Efficient Operations on GDC/TCGA data
2.7 years ago by Zhenyu Zhang ★ 1.2k
4
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0
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3.8k
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Answer: Answer: M.S. Bioinformatics and Computational Biology: Will I be able to find a job afte
2.7 years ago by Zhenyu Zhang ★ 1.2k
1
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0
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1.5k
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Answer: Answer: lncRNA quantification featurecounts
2.7 years ago by Zhenyu Zhang ★ 1.2k
0
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0
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845
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Answer: Answer: Type of Normalization done to TCGA level 3 Methylation Data
2.7 years ago by Zhenyu Zhang ★ 1.2k
0
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0
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857
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Answer: Answer: TCGA survival by gene expression. Gene is missing everywhere I look, but should
2.7 years ago by Zhenyu Zhang ★ 1.2k
0
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0
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703
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Answer: Answer: Is it representative to use the minimal matched data of RNA-Seq in TCGA?
2.7 years ago by Zhenyu Zhang ★ 1.2k
0
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0
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2.0k
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Answer: Answer: Why does TCGA RNA-seq pipeline starts from a BAM file?
2.7 years ago by Zhenyu Zhang ★ 1.2k
0
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0
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722
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Answer: Answer: When do we consider TCGA mRNA and miRNA data as matched samples?
2.7 years ago by Zhenyu Zhang ★ 1.2k
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0
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748
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Answer: Answer: How to download multiple .maf files for multiple cases from TCGA?
2.7 years ago by Zhenyu Zhang ★ 1.2k
1
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0
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1.0k
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Answer: Answer: Matched tumor/normal RNASeq expression counts in TCGA
2.7 years ago by Zhenyu Zhang ★ 1.2k
0
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0
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1.2k
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Comment: Comment: TCGA GDC / ICGC alike Data Portal
2.7 years ago by Zhenyu Zhang ★ 1.2k
0
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0
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604
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Answer: Answer: Missing normal samples in transcriptomic data from GDC portal
2.7 years ago by Zhenyu Zhang ★ 1.2k
0
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0
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873
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Answer: Answer: Ploidy in WGS samples
2.7 years ago by Zhenyu Zhang ★ 1.2k
4
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1
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1.4k
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Answer: Answer: RNA Seq HTSeq download GDC portal
2.7 years ago by Zhenyu Zhang ★ 1.2k
1
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1
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939
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Comment: Comment: Efficient Operations on GDC/TCGA data
2.7 years ago by Zhenyu Zhang ★ 1.2k
0
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0
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1.5k
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Answer: Answer: How to download Transcriptome data for differential gene expression analysis fro
3.0 years ago by Zhenyu Zhang ★ 1.2k
0
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0
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701
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Answer: Answer: Copy Number to Log2_ratio for autosomal
3.0 years ago by Zhenyu Zhang ★ 1.2k
1
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1
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1.6k
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Comment: Comment: Batch effect that is same as main factor
3.1 years ago by Zhenyu Zhang ★ 1.2k
0
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0
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880
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Answer: Answer: TCGA-COAD: Mutation prediction from WSI
3.1 years ago by Zhenyu Zhang ★ 1.2k
1
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0
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1.5k
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Answer: Answer: GDC RNA-seq pipeline: Original vs. Dr15plus?
3.3 years ago by Zhenyu Zhang ★ 1.2k
286 results • Page 4 of 6
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