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9
votes
5
replies
26k
views
PC3 & PC2 using plotPCA function in R
R plotPCA PCA
updated 24 days ago by 44k • written 7.7 years ago by ▴ 710
0
votes
0
replies
647
views
Comment: Comment: bcftools select sites with multiple combinations of FILTER column
8 months ago by User000 ▴ 710
0
votes
1
reply
647
views
Comment: Comment: bcftools select sites with multiple combinatio ns of FILTER column
8 months ago by User000 ▴ 710
1
vote
4
replies
647
views
bcftools select sites with multiple combinations of FILTER column
bcftools
8 months ago by User000 ▴ 710
0
votes
0
replies
1.1k
views
Comment: Comment: VEP/ CADD error - ERROR: Assembly is GRCh38 but CADD file does not contain GRCh3
18 months ago by User000 ▴ 710
0
votes
0
replies
574
views
Analyse UMI using picard's ExtractIlluminaBarcodes & IlluminaBasecallsToSam with 2 or 4 lanes
picard umi
18 months ago by User000 ▴ 710
0
votes
1
reply
931
views
How to remove from BAM file header all chromosomes, except chrM
samtools
updated 17 months ago by 44k • written 22 months ago by ▴ 710
1
vote
1
reply
649
views
DepthOfCoverage badly formed genome location error
coverage
updated 20 months ago by ★ 3.0k • written 22 months ago by ▴ 710
1
vote
6
replies
3.1k
views
Bedtools coverage histogram
bedtools
updated 2.0 years ago by • 0 • written 3.5 years ago by ▴ 710
1
vote
0
replies
3.1k
views
Comment: Comment: Bedtools coverage histogram
2.1 years ago by User000 ▴ 710
0
votes
0
replies
708
views
Getting the mean normalized expression values of mutants and controls in DESeq2 prior calculation of Log2FC
DESeq2 RNAseq Log2FC
2.2 years ago by User000 ▴ 710
0
votes
0
replies
59k
views
Comment: Comment: How to extract specific chromosome from vcf file
2.5 years ago by User000 ▴ 710
0
votes
1
reply
6.3k
views
Comment: Comment: A script for extracting information related to a list of gene names from a file
2.5 years ago by User000 ▴ 710
0
votes
1
reply
6.3k
views
Comment: Comment: A script for extracting information related to a list of gene names from a file
2.5 years ago by User000 ▴ 710
0
votes
0
replies
1.3k
views
Comment: Comment: g.vcf file with different FORMAT (GT:AD:DP:GQ:PL:SB vs GT:DP:GQ:MIN_DP:PL)
2.6 years ago by User000 ▴ 710
0
votes
2
replies
1.3k
views
g.vcf file with different FORMAT (GT:AD:DP:GQ:PL:SB vs GT:DP:GQ:MIN_DP:PL)
vcf
2.6 years ago by User000 ▴ 710
1
vote
0
replies
575
views
How to get sample names and genotype for SNP in multi-sample VCF file with special occurence
vcf
2.7 years ago by User000 ▴ 710
7
votes
8
replies
4.0k
views
bcftools query add header
bcftools
updated 22 months ago by ▴ 210 • written 2.7 years ago by ▴ 710
1
vote
1
reply
4.0k
views
Answer: Answer: bcftools query add header
2.7 years ago by User000 ▴ 710
0
votes
0
replies
4.0k
views
Comment: Comment: bcftools query add header
2.7 years ago by User000 ▴ 710
0
votes
1
reply
4.0k
views
Comment: Comment: bcftools query add header
2.7 years ago by User000 ▴ 710
0
votes
1
reply
4.0k
views
Comment: Comment: bcftools query add header
2.7 years ago by User000 ▴ 710
0
votes
0
replies
1.2k
views
Comment: Comment: Merge two files with multiple columns by 4 common columns
2.7 years ago by User000 ▴ 710
3
votes
8
replies
1.2k
views
Merge two files with multiple columns by 4 common columns
vcf
updated 2.7 years ago by 21k • written 2.7 years ago by ▴ 710
0
votes
3
replies
1.2k
views
Comment: Comment: Merge two files with multiple columns by 4 common columns
2.7 years ago by User000 ▴ 710
0
votes
0
replies
16k
views
Comment: Comment: How to get sample names and genotype for SNP in multi-sample VCF file
2.7 years ago by User000 ▴ 710
1
vote
1
reply
1.9k
views
Comment: Comment: Failed to instantiate plugin dbNSFP in VEP
2.7 years ago by User000 ▴ 710
0
votes
1
reply
2.1k
views
Comment: Comment: Exract only first individual from vcf file
2.8 years ago by User000 ▴ 710
0
votes
1
reply
2.1k
views
Comment: Comment: Exract only first individual from vcf file
2.8 years ago by User000 ▴ 710
5
votes
9
replies
2.1k
views
Extract only first individual from vcf files
vcf
updated 2.8 years ago by 21k • written 2.8 years ago by ▴ 710
5
votes
5
replies
1.5k
views
Enrichment plot in R with custom pathways
RNAseq DESeq2 enrichplot R
updated 2.8 years ago by 27k • written 2.8 years ago by ▴ 710
0
votes
1
reply
1.5k
views
Comment: Comment: Enrichment plot in R with custom pathways
2.8 years ago by User000 ▴ 710
0
votes
1
reply
2.3k
views
Comment: Comment: Snakemake error with 'wildcard'
2.8 years ago by User000 ▴ 710
0
votes
1
reply
2.3k
views
Answer: Answer: Snakemake error with 'wildcard'
2.8 years ago by User000 ▴ 710
0
votes
1
reply
2.3k
views
Comment: Comment: Snakemake error with 'wildcard'
2.8 years ago by User000 ▴ 710
9
votes
7
replies
7.4k
views
Split multiallelic SNPs to biallelic from vcf
python R bash vcf
updated 2.8 years ago by ★ 4.3k • written 3.7 years ago by ▴ 710
0
votes
1
reply
1.9k
views
Comment: Comment: DESeq2 contrast multiple treated conditions versus multiple control conditions
2.8 years ago by User000 ▴ 710
0
votes
0
replies
1.9k
views
Comment: Comment: DESeq2 contrast multiple treated conditions versus multiple control conditions
2.8 years ago by User000 ▴ 710
2
votes
4
replies
1.9k
views
DESeq2 contrast multiple treated conditions versus multiple control conditions
RNAseq DESeq2
2.8 years ago by User000 ▴ 710
0
votes
0
replies
2.9k
views
Comment: Comment: How to pass multiple "argument value" pair using variable in GATK command?
2.9 years ago by User000 ▴ 710
1
vote
0
replies
843
views
Enrichplot heatplot label_format does not work
enrichplot DESeq2 heatplot RNAseq
3.1 years ago by User000 ▴ 710
0
votes
0
replies
3.8k
views
Comment: Comment: DESeq2 log2FC and p-value filtering
3.2 years ago by User000 ▴ 710
0
votes
0
replies
3.8k
views
Comment: Comment: DESeq2 log2FC and p-value filtering
3.2 years ago by User000 ▴ 710
0
votes
1
reply
3.8k
views
Comment: Comment: DESeq2 log2FC and p-value filtering
3.2 years ago by User000 ▴ 710
0
votes
1
reply
3.8k
views
Comment: Comment: DESeq2 log2FC and p-value filtering
3.2 years ago by User000 ▴ 710
7
votes
7
replies
3.8k
views
DESeq2 log2FC and p-value filtering
DESeq2 RNAseq
updated 3.2 years ago by 20k • written 3.2 years ago by ▴ 710
0
votes
0
replies
774
views
DESeq2 treated vs untreated and contrast vs no contrast
DESeq2 RNAseq
3.2 years ago by User000 ▴ 710
16
votes
15
replies
13k
views
8 follow
BAM files compression
bam
updated 3.3 years ago by ▴ 230 • written 4.8 years ago by ▴ 710
2
votes
2
replies
1.5k
views
DESeq2 results difference using contrast and single conditions
DESeq2 RNAseq
3.3 years ago by User000 ▴ 710
5
votes
4
replies
1.3k
views
Convert missing genotype ./. to homozygous 0/0 in vcf
vcf
updated 3.3 years ago by ▴ 480 • written 3.4 years ago by ▴ 710
393 results • Page 1 of 8
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