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5
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4
replies
473
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Nanopore data analysis
nanopore
updated 5 days ago by 7.6k • written 5 days ago by ▴ 130
0
votes
1
reply
474
views
Comment: Comment: Nanopore data analysis
5 days ago by sarahmanderni ▴ 130
0
votes
1
reply
595
views
Comment: Comment: nanopore unaligned bam files
11 days ago by sarahmanderni ▴ 130
8
votes
5
replies
595
views
nanopore unaligned bam files
nanopore
updated 11 days ago by 152k • written 11 days ago by ▴ 130
0
votes
0
replies
834
views
Comment: Comment: Pseudoreplicate creation from bam files
6 months ago by sarahmanderni ▴ 130
0
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1
reply
834
views
Comment: Comment: Pseudoreplicate creation from bam files
6 months ago by sarahmanderni ▴ 130
2
votes
4
replies
834
views
Pseudoreplicate creation from bam files
chipseq IDR shuffle_bam
6 months ago by sarahmanderni ▴ 130
0
votes
2
replies
991
views
Atac-seq shift single-end data
single-end atac-seq
updated 11 months ago by 88k • written 18 months ago by ▴ 130
0
votes
0
replies
439
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ATAC-seq +4 -5 shift in single-end setting before motif analysis
single-end atacseq
11 months ago by sarahmanderni ▴ 130
0
votes
0
replies
1.2k
views
Comment: Comment: Statistical test to compare cell type proportions in scrnaseq data
12 months ago by sarahmanderni ▴ 130
0
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1
reply
1.2k
views
Comment: Comment: Statistical test to compare cell type proportions in scrnaseq data
12 months ago by sarahmanderni ▴ 130
5
votes
4
replies
1.2k
views
Statistical test to compare cell type proportions in scrnaseq data
compositional-analysis scRNA-seq
12 months ago by sarahmanderni ▴ 130
1
vote
1
reply
1.1k
views
Comment: Comment: PCR duplicate removal in single-end atac-seq data
12 months ago by sarahmanderni ▴ 130
4
votes
3
replies
1.1k
views
PCR duplicate removal in single-end atac-seq data
ATAC-seq pcr-duplicate
updated 12 months ago by 88k • written 12 months ago by ▴ 130
1
vote
1
reply
786
views
Batch effect issue in RNA velocity analysis
RNA-velocity integration
updated 14 months ago by 88k • written 14 months ago by ▴ 130
0
votes
0
replies
688
views
Comment: Comment: High number of detected genes per cell after doublet removal - scRNAseq data
14 months ago by sarahmanderni ▴ 130
0
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0
replies
688
views
Comment: Comment: High number of detected genes per cell after doublet removal - scRNAseq data
14 months ago by sarahmanderni ▴ 130
0
votes
3
replies
688
views
High number of detected genes per cell after doublet removal - scRNAseq data
scRNAseq duoblet
14 months ago by sarahmanderni ▴ 130
0
votes
0
replies
2.9k
views
Comment: Comment: Single cluster spanning in different locations in UMAP in scRNAseq data
15 months ago by sarahmanderni ▴ 130
6
votes
3
replies
2.9k
views
Single cluster spanning in different locations in UMAP in scRNAseq data
UMAP scRNAseq
15 months ago by sarahmanderni ▴ 130
0
votes
1
reply
1.1k
views
Comment: Comment: scRNAseq normalization
15 months ago by sarahmanderni ▴ 130
1
vote
1
reply
617
views
Seurat 5 integration
integration seurat
updated 15 months ago by ★ 19k • written 15 months ago by ▴ 130
4
votes
5
replies
1.1k
views
scRNAseq normalization
scRNA-seq SCT
updated 15 months ago by 88k • written 15 months ago by ▴ 130
3
votes
3
replies
860
views
quality control scRNAseq
scRNAseq qc
updated 15 months ago by ★ 1.9k • written 15 months ago by ▴ 130
1
vote
1
reply
1.5k
views
T2T chm13 fasta and annotation files
NGS T2T-chm13 reference-genome
updated 16 months ago by 4.7k • written 16 months ago by ▴ 130
0
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0
replies
2.0k
views
Comment: Comment: scRNA-seq quality control
19 months ago by sarahmanderni ▴ 130
0
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0
replies
2.0k
views
Comment: Comment: scRNA-seq quality control
19 months ago by sarahmanderni ▴ 130
1
vote
4
replies
2.0k
views
scRNA-seq quality control
qc scrnaseq
updated 19 months ago by ★ 1.9k • written 19 months ago by ▴ 130
1
vote
0
replies
594
views
Input data matrix from Seurat toolkit analysis for RNA velocity analysis using scvelo
seurat velocity scvelo scrnaseq
20 months ago by sarahmanderni ▴ 130
0
votes
1
reply
1.1k
views
Comment: Comment: Visualisation of accessible regions in single cell atacseq data
21 months ago by sarahmanderni ▴ 130
5
votes
3
replies
1.1k
views
Visualisation of accessible regions in single cell atacseq data
visualization scATAC-seq single-cell
updated 21 months ago by 45k • written 21 months ago by ▴ 130
1
vote
2
replies
2.4k
views
Jupyter notebook installation
Jupyter
updated 14 months ago by ▴ 10 • written 22 months ago by ▴ 130
0
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0
replies
3.1k
views
Comment: Comment: New mouse reference genome (GRCm39/mm39)
updated 22 months ago by 45k • written 22 months ago by ▴ 130
0
votes
3
replies
3.1k
views
New mouse reference genome (GRCm39/mm39)
reference-genome mm39
updated 22 months ago by 45k • written 22 months ago by ▴ 130
0
votes
1
reply
1.4k
views
Comment: Comment: bamCoverage fails in bam files with large number of small contigs in headers
22 months ago by sarahmanderni ▴ 130
0
votes
1
reply
1.4k
views
Comment: Comment: bamCoverage fails in bam files with large number of small contigs in headers
22 months ago by sarahmanderni ▴ 130
0
votes
5
replies
1.4k
views
bamCoverage fails in bam files with large number of small contigs in headers
bamCoverage
updated 22 months ago by 7.6k • written 22 months ago by ▴ 130
0
votes
1
reply
2.8k
views
Comment: Comment: RNA-seq de novo assembly alignment quality assessment
4.1 years ago by sarahmanderni ▴ 130
0
votes
1
reply
2.8k
views
Comment: Comment: RNA-seq de novo assembly alignment quality assessment
4.1 years ago by sarahmanderni ▴ 130
0
votes
1
reply
2.8k
views
Comment: Comment: RNA-seq de novo assembly alignment quality assessment
4.1 years ago by sarahmanderni ▴ 130
9
votes
9
replies
2.8k
views
RNA-seq de novo assembly alignment quality assessment
trinity rnaseq denovo assembly
4.1 years ago by sarahmanderni ▴ 130
0
votes
1
reply
3.2k
views
Microarray batch effect correction
Microarray Batch-effect
updated 14 months ago by 45k • written 7.8 years ago by ▴ 130
0
votes
1
reply
29k
views
Comment: C: TMM normalization factors in RNA-seq analysis
7.8 years ago by sarahmanderni ▴ 130
0
votes
0
replies
29k
views
Comment: C: TMM normalization factors in RNA-seq analysis
7.8 years ago by sarahmanderni ▴ 130
0
votes
0
replies
29k
views
Comment: C: TMM normalization factors in RNA-seq analysis
7.8 years ago by sarahmanderni ▴ 130
11
votes
8
replies
29k
views
TMM normalization factors in RNA-seq analysis
RNA-Seq TMM normalization
updated 7.8 years ago by 35k • written 7.8 years ago by ▴ 130
14
votes
11
replies
13k
views
6 follow
Paired-End Bam Files
paired-end bam
updated 9.4 years ago by ★ 9.6k • written 11.4 years ago by ▴ 130
0
votes
1
reply
2.1k
views
Comment: C: mRNA expression levels association
9.6 years ago by sarahmanderni ▴ 130
3
votes
4
replies
2.1k
views
mRNA expression levels association
RNA-Seq
updated 9.6 years ago by ★ 4.8k • written 9.6 years ago by ▴ 130
6
votes
3
replies
2.3k
views
Borrow Information Between Genes In Rna-Seq Analysis Methods
rna-seq
updated 9.7 years ago by 20 • written 11.3 years ago by ▴ 130
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