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0
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0
replies
413
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Comment: Comment: Pseudoreplicate creation from bam files
15 days ago by sarahmanderni ▴ 120
0
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1
reply
413
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Comment: Comment: Pseudoreplicate creation from bam files
15 days ago by sarahmanderni ▴ 120
2
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4
replies
413
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Pseudoreplicate creation from bam files
chipseq IDR shuffle_bam
15 days ago by sarahmanderni ▴ 120
0
votes
2
replies
731
views
Atac-seq shift single-end data
single-end atac-seq
updated 6 months ago by 86k • written 12 months ago by ▴ 120
0
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0
replies
281
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ATAC-seq +4 -5 shift in single-end setting before motif analysis
single-end atacseq
6 months ago by sarahmanderni ▴ 120
0
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0
replies
659
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Comment: Comment: Statistical test to compare cell type proportions in scrnaseq data
6 months ago by sarahmanderni ▴ 120
0
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1
reply
659
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Comment: Comment: Statistical test to compare cell type proportions in scrnaseq data
6 months ago by sarahmanderni ▴ 120
5
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4
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659
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Statistical test to compare cell type proportions in scrnaseq data
compositional-analysis scRNA-seq
6 months ago by sarahmanderni ▴ 120
1
vote
1
reply
625
views
Comment: Comment: PCR duplicate removal in single-end atac-seq data
6 months ago by sarahmanderni ▴ 120
4
votes
3
replies
625
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PCR duplicate removal in single-end atac-seq data
ATAC-seq pcr-duplicate
updated 6 months ago by 86k • written 6 months ago by ▴ 120
1
vote
1
reply
528
views
Batch effect issue in RNA velocity analysis
RNA-velocity integration
updated 9 months ago by 86k • written 9 months ago by ▴ 120
0
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0
replies
471
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Comment: Comment: High number of detected genes per cell after doublet removal - scRNAseq data
9 months ago by sarahmanderni ▴ 120
0
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0
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471
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Comment: Comment: High number of detected genes per cell after doublet removal - scRNAseq data
9 months ago by sarahmanderni ▴ 120
0
votes
3
replies
471
views
High number of detected genes per cell after doublet removal - scRNAseq data
scRNAseq duoblet
9 months ago by sarahmanderni ▴ 120
0
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0
replies
1.6k
views
Comment: Comment: Single cluster spanning in different locations in UMAP in scRNAseq data
9 months ago by sarahmanderni ▴ 120
6
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3
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1.6k
views
Single cluster spanning in different locations in UMAP in scRNAseq data
UMAP scRNAseq
9 months ago by sarahmanderni ▴ 120
0
votes
1
reply
709
views
Comment: Comment: scRNAseq normalization
9 months ago by sarahmanderni ▴ 120
1
vote
1
reply
397
views
Seurat 5 integration
integration seurat
updated 9 months ago by ★ 18k • written 9 months ago by ▴ 120
4
votes
5
replies
709
views
scRNAseq normalization
scRNA-seq SCT
updated 9 months ago by 86k • written 9 months ago by ▴ 120
3
votes
3
replies
582
views
quality control scRNAseq
scRNAseq qc
updated 9 months ago by ★ 1.8k • written 9 months ago by ▴ 120
1
vote
1
reply
751
views
T2T chm13 fasta and annotation files
NGS T2T-chm13 reference-genome
updated 10 months ago by 4.7k • written 10 months ago by ▴ 120
0
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0
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1.5k
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Comment: Comment: scRNA-seq quality control
13 months ago by sarahmanderni ▴ 120
0
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0
replies
1.5k
views
Comment: Comment: scRNA-seq quality control
13 months ago by sarahmanderni ▴ 120
1
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4
replies
1.5k
views
scRNA-seq quality control
qc scrnaseq
updated 13 months ago by ★ 1.8k • written 14 months ago by ▴ 120
1
vote
0
replies
432
views
Input data matrix from Seurat toolkit analysis for RNA velocity analysis using scvelo
seurat velocity scvelo scrnaseq
14 months ago by sarahmanderni ▴ 120
0
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1
reply
796
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Comment: Comment: Visualisation of accessible regions in single cell atacseq data
15 months ago by sarahmanderni ▴ 120
5
votes
3
replies
796
views
Visualisation of accessible regions in single cell atacseq data
visualization scATAC-seq single-cell
updated 15 months ago by 44k • written 15 months ago by ▴ 120
1
vote
2
replies
1.7k
views
Jupyter notebook installation
Jupyter
updated 9 months ago by ▴ 10 • written 16 months ago by ▴ 120
0
votes
0
replies
2.1k
views
Comment: Comment: New mouse reference genome (GRCm39/mm39)
updated 17 months ago by 44k • written 17 months ago by ▴ 120
0
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3
replies
2.1k
views
New mouse reference genome (GRCm39/mm39)
reference-genome mm39
updated 17 months ago by 44k • written 17 months ago by ▴ 120
0
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1
reply
1.0k
views
Comment: Comment: bamCoverage fails in bam files with large number of small contigs in headers
17 months ago by sarahmanderni ▴ 120
0
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1
reply
1.0k
views
Comment: Comment: bamCoverage fails in bam files with large number of small contigs in headers
17 months ago by sarahmanderni ▴ 120
0
votes
5
replies
1.0k
views
bamCoverage fails in bam files with large number of small contigs in headers
bamCoverage
updated 17 months ago by 7.0k • written 17 months ago by ▴ 120
0
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1
reply
2.3k
views
Comment: Comment: RNA-seq de novo assembly alignment quality assessment
3.7 years ago by sarahmanderni ▴ 120
0
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1
reply
2.3k
views
Comment: Comment: RNA-seq de novo assembly alignment quality assessment
3.7 years ago by sarahmanderni ▴ 120
0
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1
reply
2.3k
views
Comment: Comment: RNA-seq de novo assembly alignment quality assessment
3.7 years ago by sarahmanderni ▴ 120
9
votes
9
replies
2.3k
views
RNA-seq de novo assembly alignment quality assessment
trinity rnaseq denovo assembly
3.7 years ago by sarahmanderni ▴ 120
0
votes
1
reply
3.0k
views
Microarray batch effect correction
Microarray Batch-effect
updated 8 months ago by 44k • written 7.3 years ago by ▴ 120
0
votes
1
reply
28k
views
Comment: C: TMM normalization factors in RNA-seq analysis
7.4 years ago by sarahmanderni ▴ 120
0
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0
replies
28k
views
Comment: C: TMM normalization factors in RNA-seq analysis
7.4 years ago by sarahmanderni ▴ 120
0
votes
0
replies
28k
views
Comment: C: TMM normalization factors in RNA-seq analysis
7.4 years ago by sarahmanderni ▴ 120
11
votes
8
replies
28k
views
TMM normalization factors in RNA-seq analysis
RNA-Seq TMM normalization
updated 7.4 years ago by 35k • written 7.4 years ago by ▴ 120
14
votes
11
replies
12k
views
6 follow
Paired-End Bam Files
paired-end bam
updated 8.9 years ago by ★ 9.6k • written 10.9 years ago by ▴ 120
0
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1
reply
1.8k
views
Comment: C: mRNA expression levels association
9.1 years ago by sarahmanderni ▴ 120
3
votes
4
replies
1.8k
views
mRNA expression levels association
RNA-Seq
updated 9.1 years ago by ★ 4.7k • written 9.1 years ago by ▴ 120
6
votes
3
replies
2.1k
views
Borrow Information Between Genes In Rna-Seq Analysis Methods
rna-seq
updated 9.2 years ago by 20 • written 10.8 years ago by ▴ 120
0
votes
1
reply
4.0k
views
Comment: C: TopHat with older versions of Bowtie
10.5 years ago by sarahmanderni ▴ 120
3
votes
3
replies
4.0k
views
TopHat with older versions of Bowtie
bowtie Tophat
updated 3.2 years ago by 44k • written 10.5 years ago by ▴ 120
7
votes
1
reply
9.1k
views
Reference genome for mapping RNA-seq spike-in dataset
RNA-Seq alignment
updated 3.2 years ago by 44k • written 10.5 years ago by ▴ 120
1
vote
1
reply
2.3k
views
Sample clustering based on gene expression
cluster gene expression
updated 10.7 years ago by ★ 7.8k • written 10.7 years ago by ▴ 120
64 results • Page 1 of 2
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