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311
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Comment: Comment: Help with finding scRNA-seq data
5 days ago by JACKY ▴ 160
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2
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311
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Help with finding scRNA-seq data
10x scanpy python single-cell anndata
5 days ago by JACKY ▴ 160
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0
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668
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Comment: Comment: Using Tumor Immune Dysfunction and Exclusion (TIDE)
8 days ago by JACKY ▴ 160
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2
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668
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Using Tumor Immune Dysfunction and Exclusion (TIDE)
TPM cancer r
8 days ago by JACKY ▴ 160
3
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1
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337
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What is the reason that all high throughput sequencing data for the human brain is snRNA-seq instead of scRNA-seq ?
10x scanpy python single-cell anndata
updated 10 days ago by ★ 18k • written 10 days ago by ▴ 160
0
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1
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224
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What are the epithelial cells subtype in esophagus tissue ?
python scanpy anndata single-cell
updated 6 weeks ago by 85k • written 6 weeks ago by ▴ 160
0
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1
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691
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Comment: Comment: How do decide if a processed scRNA-seq data is read counts or UMI format ?
4 months ago by JACKY ▴ 160
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0
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691
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Comment: Comment: How do decide if a processed scRNA-seq data is read counts or UMI format ?
4 months ago by JACKY ▴ 160
0
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1
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691
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Comment: Comment: How do decide if a processed scRNA-seq data is read counts or UMI format ?
4 months ago by JACKY ▴ 160
1
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7
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691
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How do decide if a processed scRNA-seq data is read counts or UMI format ?
scanpy python single-cell anndata RNA
updated 4 months ago by 85k • written 4 months ago by ▴ 160
2
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6
replies
693
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Finding scRNA-seq datasets of healthy human ovaries
python GEO single-cell RNA
updated 5 months ago by 44k • written 5 months ago by ▴ 160
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0
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693
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Comment: Comment: Finding scRNA-seq datasets of healthy human ovaries
5 months ago by JACKY ▴ 160
0
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0
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693
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Comment: Comment: Finding scRNA-seq datasets of healthy human ovaries
5 months ago by JACKY ▴ 160
1
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1
reply
693
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Comment: Comment: Finding scRNA-seq datasets of healthy human ovaries
5 months ago by JACKY ▴ 160
1
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1
reply
443
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Reading files from different types as H5AD
python scanpy anndata single-cell
updated 5 months ago by ★ 3.0k • written 5 months ago by ▴ 160
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1
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1.2k
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Comment: Comment: Applying the metacell2 algorithm using python
6 months ago by JACKY ▴ 160
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0
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193
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Empty kernel in SEACells model
single-cell scanpy seacells python anndata
6 months ago by JACKY ▴ 160
0
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1
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1.2k
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Comment: Comment: Applying the metacell2 algorithm using python
6 months ago by JACKY ▴ 160
0
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9
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1.2k
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Applying the metacell2 algorithm using python
python single-cell scanpy metacell2
updated 6 months ago by ★ 2.1k • written 6 months ago by ▴ 160
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0
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1.2k
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Comment: Comment: Applying the metacell2 algorithm using python
6 months ago by JACKY ▴ 160
0
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1
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1.2k
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Comment: Comment: Applying the metacell2 algorithm using python
6 months ago by JACKY ▴ 160
12
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7
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5.9k
views
6 follow
Convert FPKM to TPM in R
r TPM normalization meta-analysis
updated 8 months ago by 44k • written 2.1 years ago by ▴ 160
4
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10
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1.4k
views
6 follow
Deciding if a study used Bulk or single-cell RNA sequencing using the GEO data
GEO RNA-seq
updated 10 months ago by 44k • written 10 months ago by ▴ 160
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1
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1.4k
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Comment: Comment: Deciding if a study used Bulk or single-cell RNA sequencing using the GEO data
10 months ago by JACKY ▴ 160
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0
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1.4k
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Comment: Comment: Deciding if a study used Bulk or single-cell RNA sequencing using the GEO data
10 months ago by JACKY ▴ 160
6
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5
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1.0k
views
Log2 transformation is well used, but is there a good paper that can be used as reference ?
TPM log2-transformation r
updated 10 months ago by 88k • written 10 months ago by ▴ 160
1
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2
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528
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What type of cancer did they study in this paper?
cancer RNAseq single-cell
updated 11 months ago by 147k • written 11 months ago by ▴ 160
0
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1
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672
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Comment: Comment: Discrepancies Between GEO Page and its article - Seeking Clarification
13 months ago by JACKY ▴ 160
0
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3
replies
672
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Discrepancies Between GEO Page and its article - Seeking Clarification
cancer GEO RNA-seq
updated 13 months ago by 44k • written 13 months ago by ▴ 160
1
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1
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5.3k
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Comment: Comment: Code for reading h5ad files in R
13 months ago by JACKY ▴ 160
0
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1
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5.3k
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Comment: Comment: Code for reading h5ad files in R
13 months ago by JACKY ▴ 160
1
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5
replies
5.3k
views
Code for reading h5ad files in R
r RNA-seq single-cell
updated 13 months ago by ★ 1.7k • written 13 months ago by ▴ 160
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1
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1.2k
views
Comment: Comment: Understaning the result of Meta-analysis of differential expression across datas
15 months ago by JACKY ▴ 160
0
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1
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1.2k
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Comment: Comment: Understaning the result of Meta-analysis of differential expression across datas
15 months ago by JACKY ▴ 160
0
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0
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1.2k
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Comment: Comment: Understaning the result of Meta-analysis of differential expression across datas
15 months ago by JACKY ▴ 160
0
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8
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1.2k
views
Understaning the result of Meta-analysis of differential expression across datasets
r differential-expression genes
updated 15 months ago by 20k • written 15 months ago by ▴ 160
0
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0
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1.4k
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Comment: Comment: Performing differential expression analysis after applying transformations on my
15 months ago by JACKY ▴ 160
0
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1
reply
1.4k
views
Comment: Comment: Performing differential expression analysis after applying transformations on my
15 months ago by JACKY ▴ 160
0
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1
reply
1.4k
views
Comment: Comment: Performing differential expression analysis after applying transformations on my
15 months ago by JACKY ▴ 160
0
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1
reply
1.4k
views
Comment: Comment: Performing differential expression analysis after applying transformations on my
15 months ago by JACKY ▴ 160
0
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1
reply
680
views
Remove batch effects on the train set to avoid information leakage
r limma batch-effect
updated 15 months ago by 44k • written 15 months ago by ▴ 160
0
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11
replies
1.4k
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Performing differential expression analysis after applying transformations on my data
normalization differential-expression r
15 months ago by JACKY ▴ 160
0
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1
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1.4k
views
Comment: Comment: Performing differential expression analysis after applying transformations on my
15 months ago by JACKY ▴ 160
0
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1
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840
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How to tune and use the MetaVolcanoR
limma Bioconductor r MetaVolcanoR
updated 16 months ago by ★ 2.0k • written 2.2 years ago by ▴ 160
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0
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1.3k
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Comment: Comment: TPM normalization but library size isn't equal to 1 million
17 months ago by JACKY ▴ 160
1
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4
replies
1.3k
views
TPM normalization but library size isn't equal to 1 million
normalization TPM cancer r
updated 17 months ago by ★ 6.9k • written 17 months ago by ▴ 160
0
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1
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931
views
Comment: Comment: Using IMmuno-PREdictive Score (IMPRES)
17 months ago by JACKY ▴ 160
0
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1
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931
views
Comment: Comment: Using IMmuno-PREdictive Score (IMPRES)
17 months ago by JACKY ▴ 160
0
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5
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931
views
Using IMmuno-PREdictive Score (IMPRES)
scaling TPM cancer normalization r
updated 17 months ago by 44k • written 17 months ago by ▴ 160
1
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1
reply
896
views
Filtering genes after TPM normalization
filtering normalization TPM r
updated 17 months ago by ▴ 250 • written 17 months ago by ▴ 160
140 results • Page 1 of 3
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