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943
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Comment: Comment: What does "OS_CNSR" and "PFS_CNSR" mean?
17 months ago by JACKY ▴ 160
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2
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943
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What does "OS_CNSR" and "PFS_CNSR" mean?
survival cancer r
17 months ago by JACKY ▴ 160
2
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3
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1.3k
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What is the best way to clean bulk RNA-seq data?
normalization TPM r
updated 17 months ago by ★ 1.3k • written 18 months ago by ▴ 160
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1
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800
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Comment: Comment: What type of normalization did they use in this article?
18 months ago by JACKY ▴ 160
2
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3
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800
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What type of normalization did they use in this article?
normalization TPM r
updated 18 months ago by 44k • written 18 months ago by ▴ 160
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1
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1.3k
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Comment: Comment: Is there anyway to cancel CPM normalization?
18 months ago by JACKY ▴ 160
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1
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1.3k
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Comment: Comment: Is there anyway to cancel CPM normalization?
19 months ago by JACKY ▴ 160
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5
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1.3k
views
Is there anyway to cancel CPM normalization?
r TPM normalization
updated 18 months ago by 14k • written 19 months ago by ▴ 160
2
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1
reply
1.1k
views
Timeout error using Biomart to get gene lengths
r biomart
updated 21 months ago by 44k • written 21 months ago by ▴ 160
0
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1
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508
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How to identify which are the the pre therapy samples?
data RNA-seq
updated 21 months ago by ★ 2.0k • written 21 months ago by ▴ 160
0
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2
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637
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Where can I get the ICB datasets in this website?
data r ICB
updated 21 months ago by 147k • written 22 months ago by ▴ 160
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1
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1.0k
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Comment: Comment: Check what are the columns that are enriched in each t-SNE cluster
22 months ago by JACKY ▴ 160
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1
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1.0k
views
Comment: Comment: Check what are the columns that are enriched in each t-SNE cluster
22 months ago by JACKY ▴ 160
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5
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1.0k
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Check what are the columns that are enriched in each t-SNE cluster
r Dimensionality-reduction MachineLearning Rtsne
updated 22 months ago by ★ 28k • written 22 months ago by ▴ 160
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0
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559
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cutpointr package in R for finding the optimal cut of a predictive model
r ROC machine caret learning
24 months ago by JACKY ▴ 160
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0
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2.1k
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Comment: Comment: Is it adviced to remove genes with very low expression in TPM data?
2.1 years ago by JACKY ▴ 160
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1
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2.1k
views
Comment: Comment: Is it adviced to remove genes with very low expression in TPM data?
2.1 years ago by JACKY ▴ 160
1
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5
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2.1k
views
Is it adviced to remove genes with very low expression in TPM data?
r TPM RNA-seq clean
updated 2.1 years ago by 4.5k • written 2.1 years ago by ▴ 160
3
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1
reply
745
views
How to calculate the effictive gene length in R?
r TPM normalization
2.1 years ago by JACKY ▴ 160
1
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2
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3.4k
views
Error in bmRequest(request = request, httr_config = httr_config, verbose = verbose) : Gateway Timeout (HTTP 504).
r ensemble biomart
updated 2.1 years ago by ★ 2.1k • written 2.1 years ago by ▴ 160
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1
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2.6k
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Comment: Comment: Understanding log2 transformation for TPM
2.1 years ago by JACKY ▴ 160
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3
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2.6k
views
Understanding log2 transformation for TPM
r transformation TPM log2
updated 2.1 years ago by ★ 1.2k • written 2.1 years ago by ▴ 160
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1
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1.1k
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Comment: Comment: Batch effect correction with cell type enrichment analysis
2.1 years ago by JACKY ▴ 160
3
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0
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5.9k
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Comment: Comment: Convert FPKM to TPM in R
2.1 years ago by JACKY ▴ 160
0
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1
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1.1k
views
Comment: Comment: Batch effect correction with cell type enrichment analysis
2.1 years ago by JACKY ▴ 160
5
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1
reply
1.6k
views
argument ".f" is missing, with no default
r exons genes
updated 2.1 years ago by 13k • written 2.1 years ago by ▴ 160
2
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6
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1.1k
views
Batch effect correction with cell type enrichment analysis
limma RNA-seq r batch-effect
updated 7 months ago by 44k • written 2.1 years ago by ▴ 160
0
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0
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3.3k
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Comment: Comment: The best way to get gene lengths for 15K+ genes?
2.1 years ago by JACKY ▴ 160
0
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1
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3.3k
views
Comment: Comment: The best way to get gene lengths for 15K+ genes?
2.2 years ago by JACKY ▴ 160
0
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1
reply
3.3k
views
Comment: Comment: The best way to get gene lengths for 15K+ genes?
2.2 years ago by JACKY ▴ 160
0
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1
reply
3.3k
views
Comment: Comment: The best way to get gene lengths for 15K+ genes?
2.2 years ago by JACKY ▴ 160
0
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1
reply
3.3k
views
Comment: Comment: The best way to get gene lengths for 15K+ genes?
2.2 years ago by JACKY ▴ 160
0
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0
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664
views
Comment: Comment: Comparing gene expression between two groups, using boxplots
2.2 years ago by JACKY ▴ 160
0
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1
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664
views
Comparing gene expression between two groups, using boxplots
r DEG TPM boxplot
2.2 years ago by JACKY ▴ 160
0
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1
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695
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Comment: Comment: TPM normalization result
2.2 years ago by JACKY ▴ 160
1
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3
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695
views
TPM normalization result
normalization r TPM
updated 2.2 years ago by 4.5k • written 2.2 years ago by ▴ 160
0
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0
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3.3k
views
Comment: Comment: The best way to get gene lengths for 15K+ genes?
2.3 years ago by JACKY ▴ 160
2
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12
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3.3k
views
The best way to get gene lengths for 15K+ genes?
r EDAseq RNA-seq
2.1 years ago by JACKY ▴ 160
0
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0
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2.3k
views
Comment: Comment: Warning - longer object length is not a multiple of shorter object length
2.3 years ago by JACKY ▴ 160
0
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1
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2.3k
views
Comment: Comment: Warning - longer object length is not a multiple of shorter object length
2.3 years ago by JACKY ▴ 160
0
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7
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2.3k
views
Warning - longer object length is not a multiple of shorter object length
genelength r TPM RNA-seq
updated 2.3 years ago by ★ 7.6k • written 2.3 years ago by ▴ 160
0
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0
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448
views
What does batch effect correction mean?
effects batch r data limma
2.3 years ago by JACKY ▴ 160
0
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0
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910
views
Comment: Comment: Searching for RNA-seq melanoma samples in TCGA or cBioPortal
2.4 years ago by JACKY ▴ 160
0
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0
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866
views
Comment: Comment: Error with TCGA package - TCGAbiolinks
2.4 years ago by JACKY ▴ 160
0
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2
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866
views
Error with TCGA package - TCGAbiolinks
TCGA r cancer
2.4 years ago by JACKY ▴ 160
4
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6
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3.0k
views
ESTIMATE tumor purity
purity r cancer
2.4 years ago by JACKY ▴ 160
2
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0
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3.0k
views
Answer: Answer: ESTIMATE tumor purity
2.4 years ago by JACKY ▴ 160
0
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3
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910
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Searching for RNA-seq melanoma samples in TCGA or cBioPortal
TCGA r cBioPortal cancer
updated 2.3 years ago by ▴ 120 • written 2.4 years ago by ▴ 160
0
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0
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3.0k
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Comment: Comment: ESTIMATE tumor purity
2.4 years ago by JACKY ▴ 160
0
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0
replies
3.0k
views
Comment: Comment: ESTIMATE tumor purity
2.4 years ago by JACKY ▴ 160
140 results • Page 2 of 3
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