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4
votes
9
replies
4.2k
views
9 follow
Converting ms or msms output to PLINK or VCF files
SNP genome sequence
updated 2.2 years ago by ▴ 50 • written 7.7 years ago by ▴ 670
0
votes
0
replies
5.1k
views
Comment: Comment: Calculating ethnicity of a sample VCF
2.5 years ago by GabrielMontenegro ▴ 670
0
votes
0
replies
3.3k
views
Answer: Answer: vcftools not ouputting log file when run from perl
2.7 years ago by GabrielMontenegro ▴ 670
2
votes
2
replies
1.3k
views
Interpretting phastConsElements from USCS Table Browser
phastcons conservation genomics ucsc
updated 21 months ago by 44k • written 3.2 years ago by ▴ 670
0
votes
3
replies
3.5k
views
Problems Using Ldhat Example Files
ld
updated 3.9 years ago by 20 • written 10.8 years ago by ▴ 670
0
votes
0
replies
1.2k
views
Comment: C: Placing random non-overlaping segments across genome [GenomicRanges]
4.3 years ago by GabrielMontenegro ▴ 670
0
votes
0
replies
5.5k
views
Comment: C: Generate random genomic positions with R
4.3 years ago by GabrielMontenegro ▴ 670
1
vote
2
replies
1.2k
views
Placing random non-overlaping segments across genome [GenomicRanges]
r genomicranges
4.3 years ago by GabrielMontenegro ▴ 670
0
votes
0
replies
636
views
Rounding error in allele frequency estimates in PLINK
SNP plink
4.4 years ago by GabrielMontenegro ▴ 670
0
votes
0
replies
2.3k
views
Comment: C: Get the longest transcript in GenomicRanges
4.5 years ago by GabrielMontenegro ▴ 670
0
votes
2
replies
2.3k
views
Comment: C: Get the longest transcript in GenomicRanges
4.5 years ago by GabrielMontenegro ▴ 670
0
votes
0
replies
2.3k
views
Comment: C: Get the longest transcript in GenomicRanges
4.5 years ago by GabrielMontenegro ▴ 670
0
votes
0
replies
2.3k
views
Comment: C: Get the longest transcript in GenomicRanges
4.5 years ago by GabrielMontenegro ▴ 670
2
votes
8
replies
2.3k
views
Get the longest transcript in GenomicRanges
ggbio r genomicranges
4.5 years ago by GabrielMontenegro ▴ 670
1
vote
3
replies
4.6k
views
SNP scoring using PLINK
plink SNP
updated 2.1 years ago by 44k • written 9.3 years ago by ▴ 670
0
votes
1
reply
5.9k
views
Comment: C: Gene plot similar to LocusZoom
updated 4.9 years ago by 44k • written 8.8 years ago by ▴ 670
15
votes
17
replies
9.7k
views
Remove not polymorphic sites from VCF
vcf genome
updated 2.8 years ago by ▴ 310 • written 5.8 years ago by ▴ 670
0
votes
1
reply
8.8k
views
Comment: C: Forcing A1/A2 alleles in PLINK in a VCF phased file
5.4 years ago by GabrielMontenegro ▴ 670
4
votes
1
reply
4.1k
views
Exclude sites on the basis of the proportion of missing data using BCFTOOLS
genome vcf vcftools bcftools
5.5 years ago by GabrielMontenegro ▴ 670
0
votes
0
replies
4.5k
views
Comment: C: Estimating LD score in PLINK
5.5 years ago by GabrielMontenegro ▴ 670
0
votes
1
reply
4.5k
views
Comment: C: Estimating LD score in PLINK
5.5 years ago by GabrielMontenegro ▴ 670
0
votes
4
replies
4.5k
views
Estimating LD score in PLINK
plink ld ldscore
updated 5.5 years ago by 44k • written 5.5 years ago by ▴ 670
0
votes
2
replies
4.1k
views
Single-Tissue eQTLs: P-value threshold in GTEX ??
snp RNA-Seq
updated 5.6 years ago by 88k • written 7.5 years ago by ▴ 670
0
votes
1
reply
9.7k
views
Comment: C: Remove not polymorphic sites from VCF
5.8 years ago by GabrielMontenegro ▴ 670
15
votes
5
replies
6.2k
views
Keep variants with 0% missing in VCF
vcf bcftools
updated 5.8 years ago by 88k • written 5.8 years ago by ▴ 670
2
votes
0
replies
2.0k
views
Comment: C: FATAL ERROR Exhausted system memory (PLINK 1.07)
5.8 years ago by GabrielMontenegro ▴ 670
1
vote
1
reply
3.9k
views
Comment: C: How to explain my QQ-plot result
5.8 years ago by GabrielMontenegro ▴ 670
0
votes
1
reply
9.7k
views
Comment: C: Remove not polymorphic sites from VCF
5.8 years ago by GabrielMontenegro ▴ 670
0
votes
1
reply
9.7k
views
Comment: C: Remove not polymorphic sites from VCF
5.8 years ago by GabrielMontenegro ▴ 670
0
votes
0
replies
9.7k
views
Comment: C: Remove not polymorphic sites from VCF
5.8 years ago by GabrielMontenegro ▴ 670
0
votes
1
reply
9.7k
views
Comment: C: Remove not polymorphic sites from VCF
5.8 years ago by GabrielMontenegro ▴ 670
0
votes
1
reply
9.7k
views
Comment: C: Remove not polymorphic sites from VCF
5.8 years ago by GabrielMontenegro ▴ 670
0
votes
1
reply
9.7k
views
Comment: C: Remove not polymorphic sites from VCF
5.8 years ago by GabrielMontenegro ▴ 670
0
votes
1
reply
3.2k
views
Comment: C: Haplotype block in PLINK using r2 values
6.0 years ago by GabrielMontenegro ▴ 670
0
votes
1
reply
3.2k
views
Comment: C: Haplotype block in PLINK using r2 values
6.0 years ago by GabrielMontenegro ▴ 670
0
votes
5
replies
3.2k
views
Haplotype block in PLINK using r2 values
plink SNP LD haplotypes
6.0 years ago by GabrielMontenegro ▴ 670
9
votes
13
replies
8.8k
views
Forcing A1/A2 alleles in PLINK in a VCF phased file
SNP PLINK VCF
updated 6.1 years ago by • 0 • written 7.2 years ago by ▴ 670
5
votes
2
replies
5.0k
views
Interpreting Ldhat Outputs
recombination
updated 6.2 years ago by • 0 • written 10.8 years ago by ▴ 670
0
votes
0
replies
15k
views
Answer: A: Visualize Effect Of Snp Variant On Protein Structure
updated 6.2 years ago by 44k • written 7.7 years ago by ▴ 670
0
votes
1
reply
2.0k
views
No output estimating LD between SNPs in VCF using PLINK
plink vcf
updated 6.3 years ago by 88k • written 6.3 years ago by ▴ 670
3
votes
2
replies
3.3k
views
Identifying mutations between haplotypes using haploNet (pegas) in R
R pegas haplotypes phylogenetics
updated 18 months ago by ▴ 40 • written 6.7 years ago by ▴ 670
0
votes
0
replies
26k
views
Comment: C: LD-decay in a r2 vs distance(cm) plot
6.7 years ago by GabrielMontenegro ▴ 670
0
votes
0
replies
3.4k
views
Answer: A: tools for Population branch statistics (PBS)
6.8 years ago by GabrielMontenegro ▴ 670
0
votes
0
replies
15k
views
Comment: C: What is population branch statistic (PBS)?
6.8 years ago by GabrielMontenegro ▴ 670
1
vote
1
reply
15k
views
Answer: A: What is population branch statistic (PBS)?
6.8 years ago by GabrielMontenegro ▴ 670
0
votes
1
reply
3.5k
views
Merging inconsistencies in PLINK
SNP PLINK
updated 7.0 years ago by 20 • written 7.2 years ago by ▴ 670
0
votes
3
replies
12k
views
Comment: C: How to interpret XPEHH (recent selection) score?
7.1 years ago by GabrielMontenegro ▴ 670
0
votes
1
reply
3.7k
views
Subsetting individuals in PLINK when IDs contain underscores "_"
plink
updated 7.2 years ago by ▴ 280 • written 7.2 years ago by ▴ 670
0
votes
1
reply
8.8k
views
Comment: C: Forcing A1/A2 alleles in PLINK in a VCF phased file
7.2 years ago by GabrielMontenegro ▴ 670
0
votes
1
reply
8.8k
views
Comment: C: Forcing A1/A2 alleles in PLINK in a VCF phased file
7.2 years ago by GabrielMontenegro ▴ 670
154 results • Page 1 of 4
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