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How to determine if a somatic mutation alters transcription factor binding site?
cancer motif TFBS somatic-mutation
updated 8 months ago by 44k • written 8 months ago by ▴ 50
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1.2k
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Comment: Comment: Help locating TCGA data from cbioportal
12 months ago by ConvolutedGenome ▴ 50
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1.2k
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Comment: Comment: Help locating TCGA data from cbioportal
12 months ago by ConvolutedGenome ▴ 50
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1
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1.2k
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Comment: Comment: Help locating TCGA data from cbioportal
12 months ago by ConvolutedGenome ▴ 50
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6
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1.2k
views
Help locating TCGA data from cbioportal
cancer TCGA RNA cbioportal CNA
12 months ago by ConvolutedGenome ▴ 50
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0
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395
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Understanding consensus CNV of PCAWG data
cancer PCAWG CNV consensus GISTIC
12 months ago by ConvolutedGenome ▴ 50
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0
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275
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How to control for UV mutational signature? (for recurrent somatic mutation)
UV somatic-signature melanoma
updated 13 months ago by 44k • written 13 months ago by ▴ 50
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1
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1.4k
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Comment: Comment: Can I liftover hs37d5 to hg38 using hg19ToHg38 chain file?
16 months ago by ConvolutedGenome ▴ 50
2
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3
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1.4k
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Can I liftover hs37d5 to hg38 using hg19ToHg38 chain file?
hs37d5 hg19 reference hg38 PCAWG
updated 16 months ago by ★ 1.2k • written 16 months ago by ▴ 50
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0
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393
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Anyone familiar with ICGC's DCC data releases?
cancer TCGA PCAWG ICGC somatic
19 months ago by ConvolutedGenome ▴ 50
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0
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3.9k
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Comment: Comment: TSS of protein coding genes
20 months ago by ConvolutedGenome ▴ 50
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1
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3.9k
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Comment: Comment: TSS of protein coding genes
20 months ago by ConvolutedGenome ▴ 50
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1.5k
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Comment: Comment: What is exactly meant by "GENCODE TSS"?
20 months ago by ConvolutedGenome ▴ 50
1
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3
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1.5k
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What is exactly meant by "GENCODE TSS"?
GENCODE transcription annotation TSS gene
20 months ago by ConvolutedGenome ▴ 50
0
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1
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3.9k
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Comment: Comment: TSS of protein coding genes
20 months ago by ConvolutedGenome ▴ 50
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0
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3.1k
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Comment: Comment: How exactly can I define promoter region from GENCODE annotation GTF file?
20 months ago by ConvolutedGenome ▴ 50
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3.1k
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Comment: Comment: How exactly can I define promoter region from GENCODE annotation GTF file?
20 months ago by ConvolutedGenome ▴ 50
0
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1
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3.1k
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Comment: Comment: How exactly can I define promoter region from GENCODE annotation GTF file?
20 months ago by ConvolutedGenome ▴ 50
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2
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3.1k
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Comment: Comment: How exactly can I define promoter region from GENCODE annotation GTF file?
21 months ago by ConvolutedGenome ▴ 50
5
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8
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3.1k
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How exactly can I define promoter region from GENCODE annotation GTF file?
promoter protein-coding GENCODE annotation
20 months ago by ConvolutedGenome ▴ 50
0
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2
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1.1k
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Resources to learn illumina's GenomeStudio?
Genotype Illumina SNP Microarray Array
updated 21 months ago by 147k • written 3.0 years ago by ▴ 50
22
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28
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19k
views
14 follow
Easy way to split VCF file by chromosome
sequence TOPMED chromosome Imputation SNP
updated 6 weeks ago by 164k • written 2.9 years ago by ▴ 50
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0
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851
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Comment: Comment: How to get gene list from GENCODE gtf file?
21 months ago by ConvolutedGenome ▴ 50
1
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2
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851
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How to get gene list from GENCODE gtf file?
protein-coding GENCODE gene
updated 20 months ago by 44k • written 21 months ago by ▴ 50
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0
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529
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How many genes are used by DAVID as the default homo sapiens background?
fisher DAVID enrichment background cancer
2.6 years ago by ConvolutedGenome ▴ 50
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0
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19k
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Comment: Comment: Easy way to split VCF file by chromosome
2.9 years ago by ConvolutedGenome ▴ 50
1
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1
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1.2k
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Why exactly do I need to fix ref allele using bcftools ?? [Genotype data]
VCF Genotype reference SNP bcftools
updated 2.9 years ago by ▴ 470 • written 2.9 years ago by ▴ 50
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0
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485
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[GenomeStudio] Why do some SNPs are listed as 'edited' eventhough I haven't edited those SNPs???
microarray SNP GenomeStudio genotype illumina
2.9 years ago by ConvolutedGenome ▴ 50
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0
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1.1k
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Comment: Comment: P-value cut-off to identify SNPs at ChIP-seq peaks? [BedTools]
3.0 years ago by ConvolutedGenome ▴ 50
0
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1
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1.1k
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Comment: Comment: P-value cut-off to identify SNPs at ChIP-seq peaks? [BedTools]
3.0 years ago by ConvolutedGenome ▴ 50
3
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4
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1.1k
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P-value cut-off to identify SNPs at ChIP-seq peaks? [BedTools]
ChIP-seq epigenomic H3K27ac Roadmap broadpeak
3.0 years ago by ConvolutedGenome ▴ 50
0
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0
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487
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Intersecting Roadmap's Histone ChIP-seq data using BedTools?!?!??!
Histone Enhancer H3K27ac Epigenetic BedTools
3.0 years ago by ConvolutedGenome ▴ 50
0
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0
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465
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How to get started with analyzing Genotype data from microarray?
Genotype Illumina eQTL Microarray Array
3.1 years ago by ConvolutedGenome ▴ 50
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0
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1.5k
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Comment: Comment: What exactly is RNA-seq probe?
3.1 years ago by ConvolutedGenome ▴ 50
0
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1
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1.5k
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Comment: Comment: What exactly is RNA-seq probe?
3.1 years ago by ConvolutedGenome ▴ 50
0
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1
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1.5k
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Comment: Comment: What exactly is RNA-seq probe?
3.1 years ago by ConvolutedGenome ▴ 50
3
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6
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1.5k
views
What exactly is RNA-seq probe?
reference genome GTEx eQTL RNA-seq pipeline
updated 3.1 years ago by 147k • written 3.1 years ago by ▴ 50
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