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What is the right choice of normalization and preprocessing before WGCNA using RNAseq data in a cohort?
normalization RNA_seq cohort WGCNA
6 weeks ago by sukeshinik5 ▴ 50
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661
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Comment: Comment: Adjusting for covariates such as duration of diabetes, age, sex and BMI
5 months ago by sukeshinik5 ▴ 50
0
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1
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661
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Comment: Comment: Adjusting for covariates such as duration of diabetes, age, sex and BMI
5 months ago by sukeshinik5 ▴ 50
4
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5
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661
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Adjusting for covariates such as duration of diabetes, age, sex and BMI
limma covariates voom
updated 5 months ago by ★ 7.7k • written 5 months ago by ▴ 50
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586
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Comment: Comment: Is there any set threshold for hisat2 alignment and featurecount assignment to s
5 months ago by sukeshinik5 ▴ 50
0
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1
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586
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Comment: Comment: Is there any set threshold for hisat2 alignment and featurecount assignment to s
5 months ago by sukeshinik5 ▴ 50
1
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4
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586
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Is there any set threshold for hisat2 alignment and featurecount assignment to select samples further?
hisat2 alignment featurecount
5 months ago by sukeshinik5 ▴ 50
0
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490
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Comment: Comment: Does latent classification analysis need a separate verification bias removal? h
updated 17 months ago by 147k • written 17 months ago by ▴ 50
1
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1
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490
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Does latent classification analysis need a separate verification bias removal? how to perform that?
latent-classification
updated 17 months ago by 44k • written 17 months ago by ▴ 50
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1.4k
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Comment: Comment: Trimming adaptor sequences before alignment
2.1 years ago by sukeshinik5 ▴ 50
0
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1
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1.4k
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Comment: Comment: Trimming adaptor sequences before alignment
2.2 years ago by sukeshinik5 ▴ 50
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1.4k
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Comment: Comment: Trimming adaptor sequences before alignment
2.2 years ago by sukeshinik5 ▴ 50
4
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6
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1.4k
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Trimming adaptor sequences before alignment
trimming adaptors data illumina seq
2.1 years ago by sukeshinik5 ▴ 50
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3.6k
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Comment: Comment: Error: cannot allocate vector of size 22.3 Gb
2.2 years ago by sukeshinik5 ▴ 50
4
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4
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3.6k
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Error: cannot allocate vector of size 22.3 Gb
wgcna memory error R
updated 3.5 years ago by 3.8k • written 3.5 years ago by ▴ 50
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