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What is the right choice of normalization and preprocessing before WGCNA using RNAseq data in a cohort?
normalization
RNA_seq
cohort
WGCNA
8 months ago by
sukeshinik5
▴ 50
0
votes
0
replies
1.2k
views
Comment:
Comment: Adjusting for covariates such as duration of diabetes, age, sex and BMI
11 months ago by
sukeshinik5
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0
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1
reply
1.2k
views
Comment:
Comment: Adjusting for covariates such as duration of diabetes, age, sex and BMI
11 months ago by
sukeshinik5
▴ 50
4
votes
5
replies
1.2k
views
Adjusting for covariates such as duration of diabetes, age, sex and BMI
limma
covariates
voom
updated 11 months ago by
Gordon Smyth
★ 8.1k • written 11 months ago by
sukeshinik5
▴ 50
0
votes
0
replies
831
views
Comment:
Comment: Is there any set threshold for hisat2 alignment and featurecount assignment to s
12 months ago by
sukeshinik5
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0
votes
1
reply
831
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Comment:
Comment: Is there any set threshold for hisat2 alignment and featurecount assignment to s
12 months ago by
sukeshinik5
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1
vote
4
replies
831
views
Is there any set threshold for hisat2 alignment and featurecount assignment to select samples further?
hisat2
alignment
featurecount
12 months ago by
sukeshinik5
▴ 50
0
votes
0
replies
612
views
Comment:
Comment: Does latent classification analysis need a separate verification bias removal? h
updated 24 months ago by
GenoMax
151k • written 24 months ago by
sukeshinik5
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1
vote
1
reply
612
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Does latent classification analysis need a separate verification bias removal? how to perform that?
latent-classification
updated 24 months ago by
Ram
45k • written 24 months ago by
sukeshinik5
▴ 50
0
votes
0
replies
1.6k
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Comment:
Comment: Trimming adaptor sequences before alignment
2.7 years ago by
sukeshinik5
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0
votes
1
reply
1.6k
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Comment:
Comment: Trimming adaptor sequences before alignment
2.7 years ago by
sukeshinik5
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0
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0
replies
1.6k
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Comment:
Comment: Trimming adaptor sequences before alignment
2.7 years ago by
sukeshinik5
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4
votes
6
replies
1.6k
views
Trimming adaptor sequences before alignment
trimming
adaptors
data
illumina
seq
2.7 years ago by
sukeshinik5
▴ 50
1
vote
0
replies
4.1k
views
Comment:
Comment: Error: cannot allocate vector of size 22.3 Gb
2.7 years ago by
sukeshinik5
▴ 50
4
votes
4
replies
4.1k
views
Error: cannot allocate vector of size 22.3 Gb
wgcna
memory
error
R
updated 4.0 years ago by
andres.firrincieli
3.9k • written 4.0 years ago by
sukeshinik5
▴ 50
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