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Comment: Comment: determine softmask regions from FASTA
4 weeks ago by Matteo Ungaro ▴ 110
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2
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508
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Comment: Comment: determine softmask regions from FASTA
4 weeks ago by Matteo Ungaro ▴ 110
2
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6
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508
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determine softmask regions from FASTA
BED FASTA softmask
updated 4 weeks ago by 15k • written 4 weeks ago by ▴ 110
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0
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880
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Comment: Comment: how to effectively pipe chromap into samtools view
6 months ago by Matteo Ungaro ▴ 110
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0
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880
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Comment: Comment: how to effectively pipe chromap into samtools view
6 months ago by Matteo Ungaro ▴ 110
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2
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880
views
Comment: Comment: how to effectively pipe chromap into samtools view
6 months ago by Matteo Ungaro ▴ 110
3
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6
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880
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how to effectively pipe chromap into samtools view
samtools bash pipe
6 months ago by Matteo Ungaro ▴ 110
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518
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Comment: Comment: trailing paired-end slashes (/) in BAM file
6 months ago by Matteo Ungaro ▴ 110
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518
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Comment: Comment: trailing paired-end slashes (/) in BAM file
6 months ago by Matteo Ungaro ▴ 110
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4
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518
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trailing paired-end slashes (/) in BAM file
awk BAM sed
updated 6 months ago by 44k • written 6 months ago by ▴ 110
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1
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536
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Comment: Comment: picard – scatter intervals by n uses
8 months ago by Matteo Ungaro ▴ 110
3
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3
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536
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picard – scatter intervals by n uses
bedtools intervals picard bed
updated 8 months ago by 165k • written 8 months ago by ▴ 110
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1.1k
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Comment: Comment: joint callset and vcf sorting, unknown TAG issue
updated 9 months ago by 165k • written 9 months ago by ▴ 110
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1.1k
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Comment: Comment: joint callset and vcf sorting, unknown TAG issue
9 months ago by Matteo Ungaro ▴ 110
2
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8
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1.1k
views
joint callset and vcf sorting, unknown TAG issue
sort bcftools GLNexus merge VCF
updated 9 months ago by 165k • written 9 months ago by ▴ 110
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1.1k
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Comment: Comment: joint callset and vcf sorting, unknown TAG issue
9 months ago by Matteo Ungaro ▴ 110
0
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1
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1.1k
views
Comment: Comment: joint callset and vcf sorting, unknown TAG issue
9 months ago by Matteo Ungaro ▴ 110
0
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0
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551
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Comment: Comment: bam merging for archaic samples
10 months ago by Matteo Ungaro ▴ 110
0
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2
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551
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bam merging for archaic samples
samtools bam
updated 10 months ago by 44k • written 10 months ago by ▴ 110
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0
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596
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Comment: Comment: filtering VCF sites and impose whatever excluded ad missing
10 months ago by Matteo Ungaro ▴ 110
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2
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596
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Comment: Comment: filtering VCF sites and impose whatever excluded ad missing
10 months ago by Matteo Ungaro ▴ 110
2
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4
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596
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filtering VCF sites and impose whatever excluded ad missing
conditions vcf filters bcftools
10 months ago by Matteo Ungaro ▴ 110
5
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4
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1.2k
views
change order of violin plots in ggplot2
R ggplot2 violin-plots
updated 11 months ago by 44k • written 11 months ago by ▴ 110
3
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0
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1.2k
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Answer: Answer: change order of violin plots in ggplot2
updated 11 months ago by 44k • written 11 months ago by ▴ 110
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0
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1.2k
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Comment: Comment: change order of violin plots in ggplot2
11 months ago by Matteo Ungaro ▴ 110
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1
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1.2k
views
Comment: Comment: change order of violin plots in ggplot2
11 months ago by Matteo Ungaro ▴ 110
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1
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979
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Comment: Comment: PCA from plink2 for SGDP using a pangenome and DeepVariant
12 months ago by Matteo Ungaro ▴ 110
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5
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979
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PCA from plink2 for SGDP using a pangenome and DeepVariant
umap DeepVariant pangenome plink2 pca
updated 12 months ago by ▴ 470 • written 12 months ago by ▴ 110
0
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1
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979
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Comment: Comment: PCA from plink2 for SGDP using a pangenome and DeepVariant
12 months ago by Matteo Ungaro ▴ 110
1
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0
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1.5k
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Comment: Comment: How to create a Venn Diagram for overlapping SVs from a merged VCF
15 months ago by Matteo Ungaro ▴ 110
1
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1
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1.5k
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Comment: Comment: How to create a Venn Diagram for overlapping SVs from a merged VCF
15 months ago by Matteo Ungaro ▴ 110
0
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1
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1.5k
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Comment: Comment: How to create a Venn Diagram for overlapping SVs from a merged VCF
15 months ago by Matteo Ungaro ▴ 110
8
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6
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1.5k
views
How to create a Venn Diagram for overlapping SVs from a merged VCF
truvari structural-variants r vcf venn-diagram
15 months ago by Matteo Ungaro ▴ 110
0
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0
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449
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Determine INDELs number (both classes separately) from reference and graph-based VCF files
INDEL vcf
updated 16 months ago by 44k • written 16 months ago by ▴ 110
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0
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593
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Merged CRAM output
warning samtools CRAM merging
19 months ago by Matteo Ungaro ▴ 110
8
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4
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1.9k
views
Merging CRAM files
samtools CRAM
updated 19 months ago by ★ 1.3k • written 20 months ago by ▴ 110
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1
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1.9k
views
Comment: Comment: Merging CRAM files
19 months ago by Matteo Ungaro ▴ 110
0
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0
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1.6k
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Comment: Comment: Edit and re-head BAM file
21 months ago by Matteo Ungaro ▴ 110
0
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0
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1.6k
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Comment: Comment: Edit and re-head BAM file
21 months ago by Matteo Ungaro ▴ 110
0
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1
reply
1.6k
views
Comment: Comment: Edit and re-head BAM file
21 months ago by Matteo Ungaro ▴ 110
3
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6
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1.6k
views
Edit and re-head BAM file
samtools BAM
updated 20 months ago by 44k • written 21 months ago by ▴ 110
2
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2
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888
views
filter VCF based on FORMAT
vcf bcftools
updated 20 months ago by 44k • written 23 months ago by ▴ 110
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1
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813
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Comment: Comment: formatting VCF file for analyses
2.4 years ago by Matteo Ungaro ▴ 110
3
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3
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813
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formatting VCF file for analyses
VCF awk
updated 20 months ago by 44k • written 2.4 years ago by ▴ 110
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0
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433
views
Chromosome Path in Pairtools
Pairtools
updated 20 months ago by 44k • written 2.9 years ago by ▴ 110
2
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3
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2.4k
views
How to clean PacBio reads
PacBio HiFi CLR
updated 2.9 years ago by ▴ 470 • written 2.9 years ago by ▴ 110
0
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1
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2.4k
views
Comment: Comment: How to clean PacBio reads
2.9 years ago by Matteo Ungaro ▴ 110
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0
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1.4k
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Comment: Comment: Issues in downloading read sets — sra fastq-dump
3.0 years ago by Matteo Ungaro ▴ 110
0
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1
reply
1.4k
views
Comment: Comment: Issues in downloading read sets — sra fastq-dump
3.0 years ago by Matteo Ungaro ▴ 110
0
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1
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1.4k
views
Comment: Comment: Issues in downloading read sets — sra fastq-dump
3.0 years ago by Matteo Ungaro ▴ 110
57 results • Page 1 of 2
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