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Comment: Comment: Output checks during Snakemake pipeline
11 weeks ago by raphael.B ▴ 520
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0
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390
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Answer: Answer: How can I Obtain hg38 cancer mutation and variation files
11 weeks ago by raphael.B ▴ 520
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290
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Answer: Answer: Generating a Python parsable local db from dbSNP
12 weeks ago by raphael.B ▴ 520
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0
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447
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Comment: Comment: A USER ERROR has occurred: Bad input: Values for QD annotation not detected for
3 months ago by raphael.B ▴ 520
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0
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456
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Comment: Comment: Snakemake rule to copy files
4 months ago by raphael.B ▴ 520
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1
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453
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Comment: Comment: BAM to Bedgraph creating an empty file
6 months ago by raphael.B ▴ 520
2
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3
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640
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Using GPUs in snakemake
Parabricks gpu snakemake slurm
7 months ago by raphael.B ▴ 520
1
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0
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640
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Answer: Answer: Using GPUs in snakemake
7 months ago by raphael.B ▴ 520
1
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2
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936
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Comment: Comment: RNA-seq pipeline
10 months ago by raphael.B ▴ 520
2
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1
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1.6k
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Answer: Answer: Individual vs. joint call VCFs
11 months ago by raphael.B ▴ 520
0
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1
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662
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Comment: Comment: bcftools=1.18 not filtering correcting MAF
11 months ago by raphael.B ▴ 520
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1
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964
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Answer: Answer: Ann.vcf format
14 months ago by raphael.B ▴ 520
1
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0
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742
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Answer: Answer: functional and genome annotation analysis
14 months ago by raphael.B ▴ 520
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0
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736
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Answer: Answer: BCFtools isec output vs BCFtools query
updated 14 months ago by 44k • written 14 months ago by ▴ 520
2
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0
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613
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Answer: Answer: Association Study
15 months ago by raphael.B ▴ 520
1
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0
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4.5k
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Answer: Answer: RVtests CMC output column definitions
15 months ago by raphael.B ▴ 520
0
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0
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1.2k
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Answer: Answer: matching gnomAD allele frequency
15 months ago by raphael.B ▴ 520
0
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1
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2.5k
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Answer: Answer: GATK memory error with Java
16 months ago by raphael.B ▴ 520
2
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0
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1.8k
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Answer: Answer: Convert files made for b38 into hg19 human reference?
16 months ago by raphael.B ▴ 520
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0
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2.3k
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Comment: Comment: Problem with mamba/conda env create
16 months ago by raphael.B ▴ 520
1
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2
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2.3k
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Comment: Comment: Problem with mamba/conda install
16 months ago by raphael.B ▴ 520
1
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0
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898
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Comment: Comment: Hwo to identify that BQSR is performed on CRAM file
16 months ago by raphael.B ▴ 520
1
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1
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898
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Answer: Answer: Hwo to identify that BQSR is performed on CRAM file
16 months ago by raphael.B ▴ 520
0
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0
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779
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Comment: Comment: rust_htslib unrecognized filter ID
17 months ago by raphael.B ▴ 520
2
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2
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779
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rust_htslib unrecognized filter ID
htslib rust SNP filtering
17 months ago by raphael.B ▴ 520
0
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0
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864
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Comment: Comment: Processing WES VCF for case control GWAS analysis
18 months ago by raphael.B ▴ 520
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2
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1.1k
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Answer: Answer: bcftools "--filter-logic" flag, what + means?
17 months ago by raphael.B ▴ 520
1
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2
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876
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Answer: Answer: how to call variants in haploid genome
18 months ago by raphael.B ▴ 520
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0
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1.2k
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Comment: Comment: vcftools on 2 snpeff vcf files
18 months ago by raphael.B ▴ 520
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1
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1.2k
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Comment: Comment: vcftools on 2 snpeff vcf files
19 months ago by raphael.B ▴ 520
2
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1
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1.2k
views
Answer: Answer: vcftools on 2 snpeff vcf files
19 months ago by raphael.B ▴ 520
1
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1
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1.2k
views
Comment: Comment: Any tutorial how to "link" SNPs with genes?
19 months ago by raphael.B ▴ 520
2
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0
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1.3k
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Comment: Comment: error with CombineGVCFs to join large number of files
20 months ago by raphael.B ▴ 520
2
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0
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1.1k
views
Answer: Answer: multiallelic variants
20 months ago by raphael.B ▴ 520
1
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1
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2.1k
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Comment: Comment: GATK GenotypeGVCFs explain
20 months ago by raphael.B ▴ 520
2
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0
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686
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Answer: Answer: Snakemake error to build synteny from BUSCO .tsv
20 months ago by raphael.B ▴ 520
0
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0
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824
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Comment: Comment: filter VCF based on FORMAT
20 months ago by raphael.B ▴ 520
2
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0
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802
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Answer: Answer: bcftools merge without multiallelic sites
20 months ago by raphael.B ▴ 520
3
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0
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615
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Answer: Answer: use fastQC to get one summary report for all the multiple .gz files
21 months ago by raphael.B ▴ 520
1
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0
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2.0k
views
Answer: Answer: Merge several input files to single output file snakemake
21 months ago by raphael.B ▴ 520
0
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1
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2.0k
views
Comment: Comment: GATK4.3 ApplyBQSR
21 months ago by raphael.B ▴ 520
0
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1
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1.3k
views
Comment: Comment: AF=NA in gnomad vcf
updated 23 months ago by 44k • written 23 months ago by ▴ 520
1
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1
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1.3k
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Answer: Answer: AF=NA in gnomad vcf
updated 23 months ago by 44k • written 23 months ago by ▴ 520
1
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0
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1.0k
views
Answer: Answer: STAR Aligment
24 months ago by raphael.B ▴ 520
0
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0
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1.0k
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Comment: Comment: STAR Aligment
24 months ago by raphael.B ▴ 520
0
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0
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2.9k
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Answer: Answer: Count missing and non missing values in a VCF file
2.1 years ago by raphael.B ▴ 520
1
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0
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929
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Comment: Comment: Representation of variables in PCA
2.2 years ago by raphael.B ▴ 520
1
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1
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1.1k
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Answer: Answer: bcftools merge doesn't recalculate AF
2.2 years ago by raphael.B ▴ 520
0
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0
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1.1k
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Answer: Answer: How to check the quality of VCF file for GWAS analysis
2.2 years ago by raphael.B ▴ 520
1
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1
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918
views
Answer: Answer: Count all variants from vcf file
2.3 years ago by raphael.B ▴ 520
81 results • Page 1 of 2
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