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Extremely low number of variants in VCF file after filtering MIN(FORMAT/DP)>10
bcftools
snp
vcf
calling
updated 3.3 years ago by
cpad0112
21k • written 3.3 years ago by
Linda
▴ 80
1
vote
0
replies
6.2k
views
Comment:
Comment: Bcftools how to add DP to FORMAT field (get per sample read depth for REF vs AL
3.3 years ago by
Linda
▴ 80
10
votes
8
replies
6.2k
views
Bcftools how to add DP to FORMAT field (get per sample read depth for REF vs ALT alleles )
bcftools
snp
vcf
calling
updated 3.3 years ago by
Michal Nevo
▴ 140 • written 3.4 years ago by
Linda
▴ 80
1
vote
2
replies
6.2k
views
Comment:
Comment: Bcftools how to add DP to FORMAT field (get per sample read depth for REF vs AL
3.3 years ago by
Linda
▴ 80
1
vote
0
replies
6.2k
views
Comment:
Comment: Bcftools how to add DP to FORMAT field (get per sample read depth for REF vs AL
3.3 years ago by
Linda
▴ 80
0
votes
0
replies
944
views
Comment:
Comment: VCF file - If format is GT:PL what does 1:161, 0 mean for GT column
3.4 years ago by
Linda
▴ 80
0
votes
2
replies
944
views
VCF file - If format is GT:PL what does 1:161, 0 mean for GT column
bcftools
vcf
3.4 years ago by
Linda
▴ 80
0
votes
1
reply
1.8k
views
Comment:
Comment: Bcftools isec output only contains one sample name - how to identify which sampl
3.4 years ago by
Linda
▴ 80
2
votes
3
replies
1.8k
views
Bcftools isec output only contains one sample name - how to identify which samples share the same variants
bcftools
vcf
isec
updated 3.4 years ago by
Kevin Blighe
88k • written 3.4 years ago by
Linda
▴ 80
1
vote
1
reply
2.4k
views
Comment:
Comment: Modify chromosome column in bam file using pysam fetch
3.7 years ago by
Linda
▴ 80
2
votes
6
replies
2.4k
views
Modify chromosome column in bam file using pysam fetch
pysam
updated 3.7 years ago by
David Parry
▴ 150 • written 3.7 years ago by
Linda
▴ 80
0
votes
0
replies
2.4k
views
Comment:
Comment: Modify chromosome column in bam file using pysam fetch
3.7 years ago by
Linda
▴ 80
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