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0
votes
1
reply
863
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removing overlaps from a bed file
bed
bedtools
updated 2.3 years ago by
iraun
6.2k • written 2.3 years ago by
peter
▴ 20
0
votes
0
replies
1.1k
views
Comment:
Comment: Meaning of allele frequency
3.1 years ago by
peter
▴ 20
2
votes
2
replies
1.1k
views
Meaning of allele frequency
snp
allele
frequency
3.1 years ago by
peter
▴ 20
0
votes
1
reply
894
views
hgmd variants from Ensembl
variants
hgmd
Ensemble
updated 2.5 years ago by
Sanjar
▴ 150 • written 3.1 years ago by
peter
▴ 20
0
votes
0
replies
923
views
Comment:
Comment: Should I look 1000 bases or 2000 bases upstream for promoters in humans
3.2 years ago by
peter
▴ 20
1
vote
2
replies
923
views
Should I look 1000 bases or 2000 bases upstream for promoters in humans
bed
CAGE
promoter
UCSC
3.2 years ago by
peter
▴ 20
0
votes
0
replies
548
views
Encode promoters
promoters
Encode
UCSC
3.2 years ago by
peter
▴ 20
0
votes
0
replies
1.6k
views
Comment:
Comment: Extracting promotes from UCSC
3.2 years ago by
peter
▴ 20
0
votes
0
replies
1.6k
views
Comment:
Comment: Extracting promotes from UCSC
3.2 years ago by
peter
▴ 20
0
votes
1
reply
1.6k
views
Comment:
Comment: Extracting promotes from UCSC
3.2 years ago by
peter
▴ 20
0
votes
6
replies
1.6k
views
Extracting promotes from UCSC
promoters
UCSC
3.2 years ago by
peter
▴ 20
0
votes
0
replies
1.1k
views
Comment:
Comment: Question regarding Enhancers
3.2 years ago by
peter
▴ 20
2
votes
3
replies
1.1k
views
Question regarding Enhancers
Enhancers
3.2 years ago by
peter
▴ 20
0
votes
1
reply
1.2k
views
Comment:
Comment: Question regarding CAGE and UCSC promoters and enhancers
3.2 years ago by
peter
▴ 20
3
votes
3
replies
1.2k
views
Question regarding CAGE and UCSC promoters and enhancers
bed
CAGE
promoter
UCSC
updated 3.2 years ago by
Charles Plessy
★ 2.9k • written 3.2 years ago by
peter
▴ 20
0
votes
0
replies
2.7k
views
Comment:
Comment: gnomAD v3 link not working for download
3.4 years ago by
peter
▴ 20
0
votes
1
reply
2.7k
views
Comment:
Comment: gnomAD v3 link not working for download
3.4 years ago by
peter
▴ 20
2
votes
5
replies
2.7k
views
gnomAD v3 link not working for download
GnomAD
snp
vcf
3.4 years ago by
peter
▴ 20
0
votes
0
replies
1.1k
views
Comment:
Comment: filtering repetitive regions with low quality/no snps in a vcf file
3.6 years ago by
peter
▴ 20
0
votes
0
replies
741
views
Calculating derived allele frequency
allele-frequency
variants
vcf
genome
ESP
3.6 years ago by
peter
▴ 20
0
votes
0
replies
885
views
Comment:
Comment: downloading manifest files on TCGA GDC
3.6 years ago by
peter
▴ 20
1
vote
2
replies
885
views
downloading manifest files on TCGA GDC
TCGA
3.6 years ago by
peter
▴ 20
0
votes
1
reply
1.0k
views
Comment:
Comment: Downloading data from 1000Genomes
3.7 years ago by
peter
▴ 20
1
vote
3
replies
1.0k
views
Downloading data from 1000Genomes
1000Genomes
vcf
updated 3.7 years ago by
zx8754
12k • written 3.7 years ago by
peter
▴ 20
0
votes
2
replies
1.1k
views
filtering repetitive regions with low quality/no snps in a vcf file
snp
vcf
3.6 years ago by
peter
▴ 20
0
votes
0
replies
1.8k
views
Comment:
Comment: Masking sites in a vcf file
3.7 years ago by
peter
▴ 20
1
vote
2
replies
1.8k
views
Masking sites in a vcf file
VCF
masker
1000Genomes
SNP
repeat
3.7 years ago by
peter
▴ 20
0
votes
0
replies
1.9k
views
Comment:
Comment: Conversion of vcf file.
3.7 years ago by
peter
▴ 20
0
votes
0
replies
985
views
using Haplotypearray in scikit-allel
vcf
ms-style
python
scikit-allel
3.7 years ago by
peter
▴ 20
0
votes
0
replies
839
views
differential gene expression (DGE) using TCGABiolinks
DGE
TCGA
tcgabiolinks
3.8 years ago by
peter
▴ 20
1
vote
0
replies
1.8k
views
Comment:
Comment: Extracting specific cancer types from MAF (Mutation Annotation Format) files fro
3.9 years ago by
peter
▴ 20
4
votes
2
replies
1.8k
views
Extracting specific cancer types from MAF (Mutation Annotation Format) files from TCGA(The Cancer Genome Atlas)
ENCODE
mutation
maf
TCGA
cancer
3.9 years ago by
peter
▴ 20
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