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Recent Replies
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This seems to indicate that the R verison you are using (or packages it depends on) are not compatible with the R version you are using any…
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Not my area of expertise but GTEx portal seems to offer visual comparison of expression across tissues, maybe checking their pipeline could…
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> I think I am mostly struggling with what would need to be coded to my dataset here and how to run this loop on my set in general.
i do…
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Pierre,
I am a novice at all of this in general and I have never used Java-based programming before. I may not be able to properly wrangl…
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There have been a couple of bugs found that affect imputation accuracy, one in build-kmer-index and one in find-paths. The find-paths bug o…
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Hi,
In your samtools flagstat, -o specifies the output format. This can be set to 'default', 'json', or 'tsv'. If -o is not specified , t…
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I wrote an R package (see [rrdr.io][1], and [github][2]) some years ago to calculate tissue specificity from bulk RNAseq based on [this pap…
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> set the Number= to 0 instead of 1;
I'm not sure it's a problem.
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ah yes, my bad ! (f…
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If you posted the entire command line then you did not include `-O $MAPPING/${i}.mapping_stats.txt` in that.
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@Pierre Lindenbaum I see. I looked up and, although present, the TAG goes like this in both files:
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Comment: joint callset and vcf sorting, unknown TAG issue
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@Pierre Lindenbaum much appreciated, thanks for the explanation and possible approaches to solve this.
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> Still, I can't understand the Invalid tag name: "1000gALT"
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INFO at 121387974 is
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this is an invalid INFO column. There is an invalid attribute named '.' followed by the attribute CpG, …
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@Pierre Lindenbaum as I don't know the meaning of `.;` and I've seen there are many in both files, I simply removed them with `grep -v`.
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