Entering edit mode
3.8 years ago
nhaus
▴
360
Hello, i have a vcf file which was generated with the GRCh37 reference genome. For downstream processing I have to annotated it with SnpEff, which works perfectly fine.
The problem is that I need versioned transcripts, and with this command
java -Xmx8g -jarsnpEff.jar GRCh37.75 test.vcf > test.ann.vcf, I unfortunately only get the "normal" transcript ID (e.g.ENST00000474887).
So my question is, if there is an option to get versioned transcripts (e.g. ENST00000474887.5) with SnpEff.
For vep for example there is the --transcript_version option which does what I want.
Cheers!
