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Provide an absolute path for both `-c` and `-dataDir`, as suggested by @ialbert.
If that doesn't work, go to `/opt/conda/pkgs/snpeff-5.2-h…
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This kind of post is usually used to announce job vacancies/availabilities, not resumes. Your title makes it even more confusing. Are you l…
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Hi, yeah standard QC steps, I filtered out all cells with a percent.mt greater than 10%.
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Assuming you are doing a functional analysis, to reduce the number of nodes you could increase the **min #/% of genes** and to decrease the…
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this sounds like the paths don't quite work out relative to the config file,
the tool is quite finicky and does not quite inform where it…
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> Can i segregate the phix reads from the other reads
Do the following.
$ bbduk.sh -Xmx10g in1=Undetermined_S0_L001_R1_001.fastq.gz i…
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Thank you for the quick response, Can i segregate the phix reads from the other reads that was not assigned to the actual samples which woo…
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Align reads to the phiX genome provided by Illumina ( https://webdata.illumina.com/downloads/productfiles/igenomes/phix/PhiX_Illumina_RTA.t…
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Do you know if `singularity` is working properly on your cluster? This is likely not the only error. There may be some other issues. You ca…
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This solved my issue! Thank you!!
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> there are quite a few reasons why we decided to do that
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> I understand that it will still take weeks.
You are again reading the information selectively. It will take on the order of weeks if you…
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Hi,
Thank you for your response. I have spent more time than I would like to admit deciding on whether or not to remove duplicates and the…
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Pretty reasonable. Thank you!
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It might also be your input channel code.
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