Latest
Open
Jobs
Tutorials
Tags
About
FAQ
Community
Planet
New Post
Log In
New Post
Latest
Open
News
Jobs
Tutorials
Forum
Tags
Planet
Users
Log In
Sign Up
About
Post does not exist.
Limit : all time
all time
today
this week
this month
this year
116,989 results • Page
1 of 2340
Sort: Rank
Rank
Views
Votes
Replies
0
votes
0
replies
14
views
How do I quantify the non-coding transcripts that I have generated after using CPAT,PLEK, and BLAST altogether?
transcript
Quantify
non-coding
34 minutes ago by
Varsha
• 0
0
votes
1
reply
59
views
Tutorial:
solution-Transcriptome.cpp:18:Transcriptome: exiting because of *INPUT FILE* error: could not open input file /geneInfo.tab #2142
STAR
written 3 hours ago by
huxiangyulove
• 0
0
votes
0
replies
41
views
How to generate table_annovar from VCF input?
vcf
annovar
4 hours ago by
melissachua90
▴ 70
0
votes
0
replies
44
views
How to handle duplicated genes in TCGA data?
TCGA
GDC
mRNA
6 hours ago by
Ngrin
• 0
0
votes
0
replies
44
views
Help interpreting KEGG module definitions for converting to NetworkX graph
definition
kegg
module
database
genomics
6 hours ago by
O.rka
▴ 720
4
votes
5
replies
4.3k
views
Tool:
GRIDSS: the Genomic Rearrangement IDentification Software Suite
Assembly
Structural-Variation
Variant-Calling
updated 7 hours ago by
dario.garvan
▴ 520 • written 7.2 years ago by
d-cameron
★ 2.9k
797
votes
167
replies
143k
views
109 follow
News:
The Biostar Handbook. A bioinformatics e-book for beginners.
training
handbook
updated 3 months ago by
Biostar
2.8k • written 7.4 years ago by
Istvan Albert
100k
0
votes
0
replies
48
views
Help! Reconstruction of locus, order contigs
contigs
cluster
alignment
locus
7 hours ago by
BATMAN
• 0
0
votes
3
replies
167
views
Merge clusters in Seurat UMAP
seurat
umap
updated 7 hours ago by
Ram
43k • written 10 hours ago by
kilcdincer
▴ 10
0
votes
0
replies
57
views
Use of ichor CNA
Dog
CNA
genome
12 hours ago by
sainavyav22
• 0
2
votes
2
replies
157
views
Single-cell ambient RNA correction: SoupX vs decontX contamination fraction
single-cell
ambient-RNA
updated 10 hours ago by
Ram
43k • written 13 hours ago by
txema.heredia
▴ 130
0
votes
0
replies
68
views
News:
Course on Manual Genome Curation
Genome-Assembly
Pretext-View
Manual-Genome-Curation
updated 7 hours ago by
Ram
43k • written 14 hours ago by
carlopecoraro2
★ 2.5k
3
votes
2
replies
168
views
Details on salmon index
Salmon
updated 14 hours ago by
Rob
6.6k • written 21 hours ago by
Lorenzo
• 0
0
votes
0
replies
63
views
Error when running create-maf-vcf at convertGVCFToHVCFForChrom step - PHGv2
PHG
pangenome
PHG_v2
14 hours ago by
Jsarria.EEAD
• 0
0
votes
1
reply
111
views
How can I calculate the OS of each patient?
overall-survival
updated 15 hours ago by
ATpoint
82k • written 15 hours ago by
Pedro
• 0
0
votes
1
reply
115
views
mitochondrial genome assembly pipeline
mammals
mitochondrial-genome
updated 15 hours ago by
Ram
43k • written 17 hours ago by
m90
▴ 30
0
votes
0
replies
63
views
cat-bgen fail
bgenix
updated 15 hours ago by
Ram
43k • written 15 hours ago by
lambard
• 0
3
votes
4
replies
240
views
Would you bother re-mapping RNA-seq data from an old GRCh38 build to a newer version?
RNA-seq
genome
updated 15 hours ago by
Ram
43k • written 22 hours ago by
Ali
• 0
3
votes
3
replies
159
views
getting exon coordinates
genomics
updated 15 hours ago by
Ram
43k • written 17 hours ago by
Xbox_27
• 0
3
votes
5
replies
242
views
Faster Needleman-Wunsch rapid global alignment of two sequences?
Needleman-Wunsch
alignment
updated 7 hours ago by
GenoMax
142k • written 17 hours ago by
Gabriel R.
★ 2.9k
0
votes
4
replies
214
views
How to extract cells of different species after mapping with combined genome?
snRNA-seq
scRNA-seq
updated 1 hour ago by
Tony
• 0 • written 1 day ago by
vk
▴ 10
1
vote
5
replies
212
views
Can I perform a correlation test with 3 biological replicates per condition?
RNA-Seq
deseq2
updated 7 hours ago by
Ram
43k • written 20 hours ago by
manuelmourato25
• 0
3
votes
4
replies
324
views
finding evidence(s) of a peptide translated from an "Upstream Open Reading Frame (uORF)"
UTR
masspec
uORF
peptide
updated 17 hours ago by
GenoMax
142k • written 20 hours ago by
Pierre Lindenbaum
161k
1
vote
9
replies
541
views
DEG analysis with limma and contrast matrix using multiple Parkinson's cohorts in whole blood: is it normal to always get NS?
rstudio
DEG
limma
updated 10 hours ago by
swbarnes2
14k • written 1 day ago by
egascon
• 0
0
votes
1
reply
103
views
API kegg - IndexError: list index out of range
kegg
API
updated 3 hours ago by
Nyksubuz
▴ 10 • written 21 hours ago by
mirwa.zidi93
• 0
0
votes
0
replies
71
views
Blog:
The Current State and Future Prospects of Long-Read Sequencing
LRS
22 hours ago by
Novogene
▴ 420
0
votes
0
replies
75
views
qPCR gene expression data analysis
qPCR
geneexpression
anova
23 hours ago by
ebertomeup
• 0
0
votes
2
replies
155
views
Sam file Header problem
Sam
Header
problem
file
5 hours ago by
saifulislam99121
• 0
1
vote
4
replies
205
views
Tool:
Converting Degree Minutes (DM) to Decimal Degrees (DD) using python script
Minutes
Decimal
offtopic
Degrees
python
updated 7 hours ago by
Ram
43k • written 1 day ago by
kuttibiotech2009
▴ 30
0
votes
1
reply
534
views
scRNAseq quality control weird double curve in nFeature vs nCount plot
scRNA-seq
QC
single
cell
BDRhapsody
analysis
updated 1 day ago by
valdirbarth
▴ 20 • written 12 months ago by
Salomé
• 0
0
votes
0
replies
87
views
select set of intervals that cover a genomic region
GRanges
bed
1 day ago by
ntsopoul
▴ 60
1
vote
1
reply
127
views
Tool:
Collect dispersed executable files and run them by using bingo.
bingo
updated 7 hours ago by
Ram
43k • written 1 day ago by
dwpeng
▴ 10
0
votes
1
reply
88
views
BiomartException: Query ERROR for existing dataset in BioMart
biomart
ensembl
wheat
python
pybiomart
updated 1 hour ago by
Nyksubuz
▴ 10 • written 1 day ago by
Luqman
• 0
2
votes
3
replies
187
views
ggrepel function: geom_text_repel()
ggplot2
ggrepel
R
updated 7 hours ago by
Ram
43k • written 1 day ago by
sooni
▴ 20
0
votes
2
replies
146
views
how to treat the replicates while performing WGCNA
clustering
WGCNA
replicates
1 day ago by
mavy
▴ 10
1
vote
1
reply
206
views
Calculate allelic frequency from VEP output vcf file
VEP
variant
1 day ago by
ramiro.barrantes
• 0
1
vote
4
replies
291
views
In one PCA plot, can I calculate the percentage of different factors that contribute to the PCA?
PCA
R
VARIANCE
14 hours ago by
diqixiaoyaoer
▴ 10
2
votes
6
replies
1.9k
views
How can you *consistently* download BioProject IDs from NCBI's BioSample database using Entrez Direct?
XML
ncbi
entrez-direct
updated 1 day ago by
Ram
43k • written 3.9 years ago by
millere
• 0
0
votes
1
reply
139
views
What's next after GATK variant calling pipeline?
GATK
pipeline
figures
DNA-seq
updated 21 hours ago by
Michael
54k • written 1 day ago by
mgranada3
▴ 30
0
votes
1
reply
114
views
Add line under stat test
stats
R
updated 2 hours ago by
Nyksubuz
▴ 10 • written 1 day ago by
Ghada
• 0
1
vote
5
replies
779
views
Converting IGV to Figure using Illustrator (or other tools)
Illustrator
IGV
written 6 months ago by
Daniel
▴ 30
0
votes
0
replies
92
views
DOCK6 installation on MacOS M1
installation
troubleshooting
DOCK6
updated 1 day ago by
GenoMax
142k • written 1 day ago by
Rodolfo Adrián
• 0
1
vote
3
replies
183
views
Genotyping sites with N in reference genome
GATK
UnifiedGenotyper
updated 1 day ago by
Zhenyu Zhang
★ 1.2k • written 1 day ago by
shpak.max
▴ 50
2
votes
4
replies
250
views
Can 5' and 3' scRNAseq be processed with the same pipeline?
singlecell
seurat
10XGenomics
scRNAseq
updated 1 day ago by
yura.grabovska
▴ 90 • written 1 day ago by
ev97
▴ 20
1
vote
14
replies
559
views
Blastn error : ncbi::CObject::ThrowNullPointerException() - Attempt to access NULL > pointer.
blast
ncbi
48 minutes ago by
hophuquy0944
• 0
0
votes
4
replies
225
views
Sequencing Depth (Read Depth) Calculations
depth
1 day ago by
LucisTheFather
• 0
0
votes
1
reply
130
views
Wrong ZYGOSITY by ensembl vep on DeepVariant vcf file
annotation
vcf
vep
zygosity
deepvariant
1 day ago by
asalimih
▴ 60
0
votes
0
replies
101
views
Is it okay to assemble my 12 metatranscriptome samples with Trinity separately?
trinity
metatranscriptome
1 day ago by
jway
• 0
2
votes
2
replies
175
views
Cannot install bwa-mem2 via conda
conda
mamba
python
updated 16 hours ago by
Ram
43k • written 1 day ago by
jsmith120f
• 0
2
votes
2
replies
188
views
genome finishing
finishing
genome
updated 1 day ago by
nd48
▴ 20 • written 1 day ago by
trezini
• 0
116,989 results • Page
1 of 2340
Recent Votes
Answer: Identifying common DEGs among multiple datasets
Answer: ggrepel function: geom_text_repel()
Comment: switch off warning in blast command line
Forward And Reverse Strand Conventions
Answer: Would you bother re-mapping RNA-seq data from an old GRCh38 build to a newer ver
Comment: Converting Degree Minutes (DM) to Decimal Degrees (DD) using python script
Answer: Details on salmon index
Recent Locations •
All
India,
just now
Canada,
2 minutes ago
India,
2 minutes ago
Spain,
6 minutes ago
Spain,
8 minutes ago
Australia,
8 minutes ago
Australia,
9 minutes ago
Recent Awards •
All
Teacher
to
Rob
6.6k
Popular Question
to
Nyksubuz
▴ 10
Popular Question
to
Govardhan Anande
▴ 150
Popular Question
to
Lhl
▴ 760
Popular Question
to
Takuma
▴ 20
Popular Question
to
BATMAN
• 0
Teacher
to
dario.garvan
▴ 520
Recent Replies
Comment: Blastn error : ncbi::CObject::ThrowNullPointerException() - Attempt to access NU
by
hophuquy0944
• 0
thank you
Comment: How to extract cells of different species after mapping with combined genome?
by
Tony
• 0
I think this method should be applicable to all high-throughput single-cell RNA-seq platforms. Although the method of determining cell spec…
Comment: BiomartException: Query ERROR for existing dataset in BioMart
by
Nyksubuz
▴ 10
The dataset you want (taestivum_eg_gene) exists within the "plants_mart" schema, not the default schema. Your current code assumes the defa…
Comment: Add line under stat test
by
Nyksubuz
▴ 10
You could use [this][1] [1]: https://ggplot2.tidyverse.org/reference/geom_segment.html
Comment: API kegg - IndexError: list index out of range
by
Nyksubuz
▴ 10
It might be because the gene symbol is not found in the KEGG database. Add some extra error handling before parsing the results or do a man…
Comment: Sam file Header problem
by
saifulislam99121
• 0
Thank you for your reply. I am not very much sure about this RG. Can you explain me a bit?
Comment: GRIDSS: the Genomic Rearrangement IDentification Software Suite
by
dario.garvan
▴ 520
It seems that Alexandrov's [structural variant and copy number signatures][1] estimated by the [SigProfiler software ecosystem][2] aren't c…
Comment: Faster Needleman-Wunsch rapid global alignment of two sequences?
by
GenoMax
142k
Then you may want to see if a program like `lastz` ([**LINK**][1]) may be useful. [1]: https://github.com/lastz/lastz
Comment: Collect dispersed executable files and run them by using bingo.
by
Ram
43k
What is the purpose of this tool? I have `~/bin` in my $PATH and I soft-link all executables I need to that location so why install a new t…
Comment: Merge clusters in Seurat UMAP
by
bk11
★ 2.4k
Can you try this? library(dplyr) seuratobj@meta.data <- seuratobj@meta.data %>% mutate(seurat_clusters = recode(seurat_clu…
Comment: Merge clusters in Seurat UMAP
by
kilcdincer
▴ 10
Thank you for the response but it does not change anything.
Comment: Merge clusters in Seurat UMAP
by
bk11
★ 2.4k
I have not tested but you could try something like below- seuratobj$seurat_clusters[seuratobj$seurat_clusters==5]=0 seuratobj$seur…
Comment: Faster Needleman-Wunsch rapid global alignment of two sequences?
by
Gabriel R.
★ 2.9k
I know about it, isn't there a simple C++ static binary?
Comment: Faster Needleman-Wunsch rapid global alignment of two sequences?
by
Gabriel R.
★ 2.9k
needle is great! but it does not handle sequences of 100k or so.
Comment: Blastn error : ncbi::CObject::ThrowNullPointerException() - Attempt to access NU
by
Ram
43k
Please use the formatting bar (especially the `code` option) to present your post better. You can use backticks for inline code (\`text\` b…
Traffic: 1977 users visited in the last hour
Content
Search
Users
Tags
Badges
Help
About
FAQ
Access
RSS
API
Stats
Use of this site constitutes acceptance of our
User Agreement and Privacy Policy
.
Powered by the
version 2.3.6