Entering edit mode
12 days ago
analyst
▴
50
Dear scientists,
I have to impute my variants (combined VCF file of multiple samples). I found Beagle tool for imputation in linux. I don't have idea about reference panel file why it is important when to use it and how to create it.
This is the command:
java -jar beagle.01Mar24.d36.jar gt=input.vcf out=imputed.vcf
Should I use impute parameter as well? If yes should it be true or false
Thankyou!