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1,000 results • Page
1 of 20
Sort: Rank
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Views
Votes
Replies
5
votes
4
replies
388
views
Forum:
Ideal PC configurations and operating system for bioinformatics laboratory
PC
6 days ago by
Estevão
• 0
0
votes
0
replies
181
views
Forum:
Improvement on automatic annotation of single-cell RNA-seq data from the literature using LLM
annotation
scRNA
llm
15 days ago by
yxwucq
• 0
4
votes
2
replies
332
views
Forum:
Bioinformatics: Where do I start
Sequencing
updated 21 days ago by
Ram
43k • written 22 days ago by
Adi
▴ 10
7
votes
7
replies
1.7k
views
Forum:
Bioinformatician who was retaliated against after reporting discriminatory harassment - Please help me navigate getting out of the situation I'm in
Career
advice
updated 22 days ago by
Dunois
★ 2.5k • written 23 days ago by
AdviceSeeker
• 0
1
vote
2
replies
371
views
Forum:
VCF bulk handling
bcftools
SnpEff
WGS
VEP
VCF
21 days ago by
Javier
• 0
16
votes
10
replies
1.1k
views
6 follow
Forum:
F*up Night style events for Bioinformatics ? Comment if you're interested!
mistakes
updated 5 weeks ago by
Madelaine Gogol
5.3k • written 5 weeks ago by
Ann
★ 2.4k
1
vote
1
reply
236
views
Forum:
Can I use this community for software development?
software-development
updated 6 weeks ago by
Ram
43k • written 6 weeks ago by
avpuzanov
• 0
5
votes
2
replies
398
views
Forum:
Can questions and answers on biostars be asked only in English? Can't I use Russian for example?
language
updated 6 weeks ago by
Michael
54k • written 6 weeks ago by
avpuzanov
• 0
0
votes
0
replies
186
views
Forum:
Field of Study in Computational Biology
Genomics
Computational-Biology
PhD
updated 7 weeks ago by
Ram
43k • written 7 weeks ago by
Mohammed
• 0
1
vote
3
replies
492
views
Forum:
Development plan for a bioinformatics database developer/coder
developer
7 weeks ago by
pixie@bioinfo
★ 1.5k
7
votes
8
replies
732
views
Forum:
Bioinformatics career transition
career
forum
updated 7 weeks ago by
jared.andrews07
★ 16k • written 7 weeks ago by
jevill17
▴ 20
4
votes
2
replies
510
views
Forum:
Exploring Amino Acid Patterns in Proteins Through N-gram Analysis
protein
CAFA5
8 weeks ago by
Anatoly A.
▴ 10
6
votes
6
replies
797
views
Forum:
You have 3 days of zero obligations and expansive resources. What are you building?
hypothetical
thought-experiment
8 weeks ago by
jared.andrews07
★ 16k
0
votes
0
replies
177
views
Forum:
What other data types and pipelines you would like to see from the Genomics Data Commons (GDC)
gdc
tcga
genomics-data-commons
updated 9 weeks ago by
Ram
43k • written 9 weeks ago by
Zhenyu Zhang
★ 1.2k
0
votes
2
replies
406
views
Forum:
What's the state of the art in bacterial whole genome alignment?
whole
genome
alignment
mauve
9 weeks ago by
Dave Carlson
★ 1.7k
31
votes
12
replies
1.0k
views
7 follow
Forum:
Nextflow and self-made pipelines opinion
nextflow
pipeline
data-analysis
9 weeks ago by
karlaarz
▴ 90
5
votes
4
replies
584
views
Forum:
Would reaching out to local labs and startups help with my career transition?
career
volunteering
updated 10 weeks ago by
GenoMax
142k • written 10 weeks ago by
Mango
▴ 10
1
vote
2
replies
390
views
Forum:
Exploring Career Reentry: Challenges and opportunities for Women After Maternity and Childcare Breaks
Maternity
Career-Gap
career-reentry
updated 10 weeks ago by
ATpoint
82k • written 11 weeks ago by
ashaneev07
▴ 20
8
votes
7
replies
838
views
6 follow
Forum:
Tower Server configuration for NGS data analysis
NGS
updated 11 weeks ago by
emmanouil.a
▴ 120 • written 3 months ago by
harasharan
• 0
1
vote
0
replies
295
views
Forum:
list of bioinformatics tools in cancer genomics
mutations
CNA
cancer
genomics
LOH
updated 11 weeks ago by
Pierre Lindenbaum
161k • written 11 weeks ago by
Bogdan
★ 1.4k
4
votes
2
replies
396
views
Forum:
bulk seq vs. sc-seq
scATAC-seq
ATAC-seq
scRNAseq
RNAseq
updated 3 months ago by
dsull
★ 6.0k • written 3 months ago by
SebKittelmann
▴ 10
8
votes
6
replies
2.9k
views
Forum:
Demonstrating Exponential Growth In Pre-School
education
written 10.2 years ago by
Asaf
10k
0
votes
0
replies
211
views
Forum:
tutorial for carrier screening analyses?
carrier-screening
updated 3 months ago by
Ram
43k • written 3 months ago by
Akos
▴ 20
2
votes
3
replies
448
views
Forum:
My Project
Project
CLI
MD-Simulations
Molecular-docking
3 months ago by
Ajay A Shettigar
• 0
17
votes
11
replies
1.0k
views
Forum:
How to overcome the imposter syndrome in bioinformatics?
advice
3 months ago by
sil_bioinfo
▴ 40
10
votes
7
replies
2.3k
views
Forum:
How to learn bioinformatics?
learning
updated 3 months ago by
Samuel Lampa
★ 1.3k • written 23 months ago by
sakichwan
▴ 20
26
votes
27
replies
2.1k
views
10 follow
Forum:
Determining computer time required
computer
hpc
time
updated 3 months ago by
dsull
★ 6.0k • written 3 months ago by
Rozita
▴ 40
7
votes
6
replies
756
views
Forum:
where to work as a bioinformatician (NGS/IA)
employment
omics
ia
ngs
updated 3 months ago by
Ram
43k • written 3 months ago by
Petur
▴ 20
21
votes
12
replies
3.6k
views
Forum:
How to Use Biostars Part-3: Formatting Text and Using GitHub Gists
meta
how-to
documentation
3 months ago by
Ram
43k
2
votes
1
reply
447
views
Forum:
Cataloguing available spatial transcriptomics tools, then linking them together into a workflow?
cytassist
transcriptomics
nanostring
xenium
visium
3 months ago by
LauferVA
4.2k
49
votes
20
replies
2.1k
views
10 follow
Forum:
First experiences matter
first-time
tolerance
updated 4 months ago by
Michael Love
★ 2.6k • written 4 months ago by
Mensur Dlakic
★ 27k
4
votes
3
replies
799
views
Forum:
How to get started in bioinformatics
students
updated 3 months ago by
Ram
43k • written 4 months ago by
Soidihane
▴ 10
2
votes
2
replies
594
views
Forum:
Do batches contain biological variations in omics data (RNAseq or scRNAseq)?
combat
single-cell
omics
batch
rnaseq
updated 4 months ago by
Ram
43k • written 4 months ago by
cwwong13
▴ 40
0
votes
2
replies
3.2k
views
Forum:
I’m considering a career transition from software engineering to bioinformatics. Is it a good fit for me?
career
updated 4 months ago by
GenoMax
142k • written 4 months ago by
Mango
▴ 10
5
votes
3
replies
625
views
Forum:
Binning the rare biosphere
metagenomics
soil
assembly
techniques
binning
updated 4 months ago by
Mensur Dlakic
★ 27k • written 4 months ago by
Konstantin
▴ 20
6
votes
2
replies
679
views
Forum:
how to start Bioinformatics?
basics
updated 4 months ago by
Mensur Dlakic
★ 27k • written 4 months ago by
sajibsuvo70
• 0
19
votes
5
replies
1.2k
views
6 follow
Forum:
What Are The Most Influential Bioinformatics/Computational Biology Papers Of 2023?
genomics
snps
survey
papers
4 months ago by
Raony Guimarães
★ 1.4k
4
votes
6
replies
949
views
6 follow
Forum:
Bioinformatics: what do you think of it in the next 20 years?
future
updated 5 months ago by
Ram
43k • written 5 months ago by
Daniel
• 0
1
vote
1
reply
499
views
Forum:
want to work in open source project/project in bioinformatics
project
updated 5 months ago by
Ram
43k • written 5 months ago by
Afeef
• 0
3
votes
5
replies
1.0k
views
Forum:
Current Trends in Bioinformatics
structural-bioinformatics
updated 5 months ago by
Ram
43k • written 6 months ago by
Paulo
• 0
21
votes
11
replies
2.5k
views
6 follow
Forum:
Rust bioinformatics projects ideas
projects
scRNA-seq
RNA-seq
Rust
updated 5 months ago by
Jeremy Leipzig
22k • written 14 months ago by
bompipi95
▴ 150
176
votes
46
replies
19k
views
26 follow
Forum:
Crac: Funny And/Or Weird Names For Bioinformatics Tools
humor
5 months ago by
Istvan Albert
100k
3
votes
2
replies
633
views
Forum:
RNA-Seq data analysis - question
Python
RNA-Seq
R
updated 6 months ago by
fturner
▴ 10 • written 6 months ago by
sil_bioinfo
▴ 40
0
votes
0
replies
383
views
Forum:
How to learn bioinformatics online?
self-education
education
learning
updated 6 months ago by
Ram
43k • written 6 months ago by
Brian Rey | BioLearn
• 0
6
votes
5
replies
2.3k
views
Forum:
Maintaning internal or private installation of Biostar or a similar Q&A site
Biostars
6 months ago by
tshtatland
▴ 190
7
votes
9
replies
1.4k
views
6 follow
Forum:
Mentor for a beginner bioinformatics student
project
mentor
6 months ago by
UT_FAN
▴ 40
0
votes
0
replies
471
views
Forum:
Steps after doublet detection in single cell data
scRNA
doublet
7 months ago by
ishwarvh
• 0
0
votes
0
replies
363
views
Forum:
Automated Checks And QA
retrospective
7 months ago by
Sasha
▴ 840
7
votes
13
replies
1.4k
views
Forum:
How do you validate and verify your pipeline's software updates?
Validation
Verification
Quality-Assurance
updated 6 months ago by
Ram
43k • written 7 months ago by
kieran
▴ 10
21
votes
7
replies
12k
views
Forum:
Bioinformatics short paper journal resource [software/webapps/database]
journal
software
webapp
updated 7 months ago by
Gennady Khvorykh
▴ 100 • written 8.1 years ago by
Sukhi Singh
11k
1,000 results • Page
1 of 20
Recent Votes
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Answer: Why is RNA-Seq library size not constant among samples?
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Recent Replies
Answer: How to compare compare two Sam files to check mapping
by
DavidStreid
▴ 90
Curious if others have also benefited from Picard's [CompareSAMs][1] tool. Seems to do exactly what Madhu has requested. If the headers …
Answer: How/where can I get fungal mitogenome data for analysis?
by
alex.zaccaron
▴ 410
The best repository is probably NCBI Organelle Resources. You can search by taxonomy and download their mt genomes. Check it out for fungi…
Answer: How/where can I get fungal mitogenome data for analysis?
by
GenoMax
142k
Good place to start looking: https://www.ncbi.nlm.nih.gov/genome/organelle/ Mitochondrial genomes may also be included in full genomes so …
Comment: Correlating Bulk Differential Expression with quantitative
by
Nicholas
• 0
Thank you! I will give it a shot
Answer: How can I analyze normalized expression data?
by
Bastien Hervé
5.3k
This has been issued a dozen times before. Have a look at Limma package. https://support.bioconductor.org/p/126817/ https://support.bioco…
Comment: Error in plotting PCA plot in seurat
by
Bastien Hervé
5.3k
Without your code, it is impossible to make any statement. Please provide the code generating that issue. By googling, here is a [similar …
Comment: A question about reference genome for creating the consensus sequence
by
me
• 0
Hi, thanks for your information. I am a bit confused now. Does this mean the cram file already contained reference genome information? I in…
Comment: PseudobulkExpression.Seurat error
by
Bastien Hervé
5.3k
> None of the requested assays are present in the object Does the assay `originalexp` exist in your object `seurat_from_cds` ?
Comment: identifying transgene insertion site in WGS
by
Cameron.walker9900
• 0
When calling for SVs using gridds, should I use the reference genome that I added my transgene to, or should I use the unedited reference?
Comment: Question regarding WGCNA
by
deepak
• 0
Thank for the reply. I am running this code: # set a set of soft-thresholding powers powers = c(c(1:20), seq(from = 22, to=30, by=2)) # Ca…
Comment: RNA seq analysis
by
prifa
• 0
thank you for your reply Zepper, a bit clarification, I took all the samples from SRA data table, but yes from different lab and also diffe…
Comment: RNA seq analysis
by
Matthias Zepper
4.6k
That you have a varying number of replicates is not ideal ([see here why][1]), but manageable. See for example the [Specific experimental d…
Comment: Percentage coverage of reference genome by de novo genome
by
Joe
21k
OK, in that case it should be even easier as its just a single pairwise alignment, so the same advice holds.
Comment: FarmCPU - how to explain the reported 'effect'?
by
chloek88
• 0
Hi Phillip, Did you ever figure out the answer to this? I also have rMVP results with a column 'effect', values ranging from ~-1.4 to +1…
Comment: Soft-clipping read ends based on read group
by
chenl
▴ 10
Hi, Can you please share how did you clip both ends of the reads with ClipReads? Clipping form the start with `-CT "1-3"` for instance wor…
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