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Answer:
Answer: Design for complex RNA-Seq experiment using Deseq2
3 days ago by
swbarnes2
14k
0
votes
1
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754
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Comment:
Comment: DEG analysis with limma and contrast matrix using multiple Parkinson's cohorts i
4 days ago by
swbarnes2
14k
0
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1
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754
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Comment:
Comment: DEG analysis with limma and contrast matrix using multiple Parkinson's cohorts i
5 days ago by
swbarnes2
14k
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1
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575
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Answer:
Answer: In IGV is this a heterogeneous mutation or false call?
10 days ago by
swbarnes2
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252
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Comment:
Comment: Differentail gene expression results
12 days ago by
swbarnes2
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0
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300
views
Comment:
Comment: How to compute TPM normalized values for TCGA miRNA data?
14 days ago by
swbarnes2
14k
0
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0
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421
views
Comment:
Comment: Understanding STAR output (Aligned.out.sam file)
14 days ago by
swbarnes2
14k
0
votes
1
reply
375
views
Answer:
Answer: Error in checkFullRank(modelMatrix) : the model matrix is not full rank, so t
15 days ago by
swbarnes2
14k
0
votes
0
replies
502
views
Comment:
Comment: Differential Expression Analysis using DESeq2 in R
17 days ago by
swbarnes2
14k
0
votes
1
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457
views
Answer:
Answer: Clarification regarding SAM flags "mate reverse strand" (flag 16/0x10) and "read
17 days ago by
swbarnes2
14k
0
votes
0
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502
views
Comment:
Comment: Differential Expression Analysis using DESeq2 in R
17 days ago by
swbarnes2
14k
0
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0
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378
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Answer:
Answer: Sequence read length shorter than flow cell specification
25 days ago by
swbarnes2
14k
1
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0
replies
779
views
Comment:
Comment: PCA plot (Suggestions Needed)
26 days ago by
swbarnes2
14k
0
votes
1
reply
970
views
Comment:
Comment: Adding CB tag to bam file
26 days ago by
swbarnes2
14k
1
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0
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779
views
Comment:
Comment: PCA plot (Suggestions Needed)
26 days ago by
swbarnes2
14k
0
votes
0
replies
779
views
Comment:
Comment: PCA plot (Suggestions Needed)
26 days ago by
swbarnes2
14k
0
votes
1
reply
624
views
Comment:
Comment: To get p-values for the TPM
26 days ago by
swbarnes2
14k
1
vote
0
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406
views
Comment:
Comment: Should I use unpaired reads from trimmomatic
27 days ago by
swbarnes2
14k
0
votes
0
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352
views
Answer:
Answer: from row count to tpm
28 days ago by
swbarnes2
14k
0
votes
1
reply
556
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Comment:
Comment: Marking duplicates using UMIs
4 weeks ago by
swbarnes2
14k
0
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0
replies
565
views
Comment:
Comment: Free/open source 23andme-like analysis
4 weeks ago by
swbarnes2
14k
0
votes
0
replies
1.4k
views
Comment:
Comment: Cellranger count error: Input FASTQ file ended prematurely
4 weeks ago by
swbarnes2
14k
0
votes
1
reply
970
views
Comment:
Comment: Adding CB tag to bam file
4 weeks ago by
swbarnes2
14k
0
votes
0
replies
821
views
Comment:
Comment: RNA seq differential expression analysis
4 weeks ago by
swbarnes2
14k
0
votes
1
reply
970
views
Answer:
Answer: Adding CB tag to bam file
4 weeks ago by
swbarnes2
14k
2
votes
1
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752
views
Answer:
Answer: DEG analysis of RNA-seq data across multiple tissues and two conditions
4 weeks ago by
swbarnes2
14k
0
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0
replies
645
views
Answer:
Answer: Removing adapter/primer sequence from reads while keeping flanking regions
7 weeks ago by
swbarnes2
14k
0
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1
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645
views
Comment:
Comment: Removing adapter/primer sequence from reads while keeping flanking regions
7 weeks ago by
swbarnes2
14k
0
votes
0
replies
464
views
Comment:
Comment: Seeking Help with Unexpected MA Plot Output
7 weeks ago by
swbarnes2
14k
1
vote
0
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452
views
Comment:
Comment: Problem generating paired end reads when converting Cell Ranger's BAM result to
7 weeks ago by
swbarnes2
14k
0
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0
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343
views
Answer:
Answer: Find out shared differentially expressed genes between two cell lines due to kno
8 weeks ago by
swbarnes2
14k
0
votes
0
replies
321
views
Answer:
Answer: Detecting viruses in human rna seq data
8 weeks ago by
swbarnes2
14k
1
vote
1
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445
views
Answer:
Answer: Is it better to pool samples prior to running deseq2, or should the algorithm be
9 weeks ago by
swbarnes2
14k
2
votes
0
replies
623
views
Answer:
Answer: Overriding a color palette in R to emphasize specific data points
9 weeks ago by
swbarnes2
14k
0
votes
0
replies
601
views
Comment:
Comment: RNA_seq
9 weeks ago by
swbarnes2
14k
0
votes
1
reply
601
views
Answer:
Answer: RNA_seq
9 weeks ago by
swbarnes2
14k
1
vote
0
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398
views
Answer:
Answer: Is it feasible to merge Illumina RNA-Seq data with varying read lengths?
10 weeks ago by
swbarnes2
14k
2
votes
0
replies
408
views
Answer:
Answer: Re. Batch effect correction in data with a design matrix without full rank
10 weeks ago by
swbarnes2
14k
0
votes
1
reply
576
views
Answer:
Answer: RNA Seq Sample Outlier
10 weeks ago by
swbarnes2
14k
1
vote
1
reply
457
views
Answer:
Answer: STAR alignment setting for RNA-Seq data from mouse background expressing a human
10 weeks ago by
swbarnes2
14k
1
vote
1
reply
539
views
Answer:
Answer: (STAR) What causes a high number of reads that are unmapped because they are too
10 weeks ago by
swbarnes2
14k
2
votes
1
reply
348
views
Answer:
Answer: Single cell rna sequencing analysis using R help
10 weeks ago by
swbarnes2
14k
3
votes
0
replies
462
views
Answer:
Answer: single cell rna seq-how to DEG analyze??(full code & Dimplot added)
11 weeks ago by
swbarnes2
14k
1
vote
0
replies
264
views
Answer:
Answer: biological replicate in STAR command
11 weeks ago by
swbarnes2
14k
1
vote
0
replies
423
views
Answer:
Answer: PCA plot analysis
12 weeks ago by
swbarnes2
14k
0
votes
1
reply
474
views
Answer:
Answer: ENA fastq file shown as single-end but has 2 fastq files: X.fastq.gz and Y.fastq
3 months ago by
swbarnes2
14k
2
votes
0
replies
346
views
Comment:
Comment: Getting less DE genes when incorporating all samples
3 months ago by
swbarnes2
14k
1
vote
0
replies
480
views
Comment:
Comment: Count table statistical analysis
3 months ago by
swbarnes2
14k
1
vote
1
reply
618
views
Comment:
Comment: Trouble Understanding DESeq2 Design Formula ("Model Matrix is not Full Rank")
3 months ago by
swbarnes2
14k
0
votes
0
replies
618
views
Answer:
Answer: Trouble Understanding DESeq2 Design Formula ("Model Matrix is not Full Rank")
3 months ago by
swbarnes2
14k
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