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How to collapse leaves with the same name in ETE3 tree?
python ete3
updated 9 weeks ago by • 0 • written 2.9 years ago by 11k
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21k
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Comment: Comment: how do I run repeat masker
4 months ago by Andrzej Zielezinski 11k
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Comment: Comment: Get a reference phylogenetic tree of known taxa from GTDB
5 months ago by Andrzej Zielezinski 11k
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706
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Answer: Answer: Is reciprocal best hit method applicable for non-coding RNA to find orthologs?
10 months ago by Andrzej Zielezinski 11k
4
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784
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Answer: Answer: Tool for aligning short protein sequences
15 months ago by Andrzej Zielezinski 11k
2
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696
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Answer: Answer: Choosing right statistical test in genomics
16 months ago by Andrzej Zielezinski 11k
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Answer: Answer: Global Alignment
16 months ago by Andrzej Zielezinski 11k
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1.0k
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Comment: Comment: understand the gene result in ncbi
17 months ago by Andrzej Zielezinski 11k
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3.1k
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Comment: Comment: fasta sequences into non-overlapping k-mers using python
18 months ago by Andrzej Zielezinski 11k
3
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1
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3.1k
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Answer: Answer: fasta sequences into non-overlapping k-mers using python
18 months ago by Andrzej Zielezinski 11k
3
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1
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1.2k
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Answer: Answer: Extracting k-mer counts from multiple genome sequence files
18 months ago by Andrzej Zielezinski 11k
4
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2
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1.1k
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Answer: Answer: Filtering a fasta file based on blast results file
19 months ago by Andrzej Zielezinski 11k
3
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1
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4.0k
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Answer: Answer: How to delete spaces in rows from csv file in Python
19 months ago by Andrzej Zielezinski 11k
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1
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4.0k
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Comment: Comment: How to delete spaces in rows from csv file in Python
19 months ago by Andrzej Zielezinski 11k
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1
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4.0k
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Comment: Comment: How to delete spaces in rows from csv file in Python
19 months ago by Andrzej Zielezinski 11k
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2.4k
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Comment: Comment: Parsing a genebank file and tsv file - extracting and outputting specific data t
19 months ago by Andrzej Zielezinski 11k
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2.4k
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Comment: Comment: Parsing a genebank file and tsv file - extracting and outputting specific data t
19 months ago by Andrzej Zielezinski 11k
2
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1
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2.4k
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Answer: Answer: Parsing a genebank file and tsv file - extracting and outputting specific data t
19 months ago by Andrzej Zielezinski 11k
1
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0
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2.4k
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Comment: Comment: Parsing a genebank file and tsv file - extracting and outputting specific data t
19 months ago by Andrzej Zielezinski 11k
0
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1
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2.4k
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Comment: Comment: Parsing a genebank file and tsv file - extracting and outputting specific data t
19 months ago by Andrzej Zielezinski 11k
0
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1
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2.4k
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Comment: Comment: Parsing a genebank file and tsv file - extracting and outputting specific data t
19 months ago by Andrzej Zielezinski 11k
3
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1
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975
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Answer: Answer: Number of sequences in RefSeq.
19 months ago by Andrzej Zielezinski 11k
1
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1
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2.4k
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Comment: Comment: Parsing a genebank file and tsv file - extracting and outputting specific data t
19 months ago by Andrzej Zielezinski 11k
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0
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924
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Comment: Comment: Making my python code better
19 months ago by Andrzej Zielezinski 11k
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0
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905
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Comment: Comment: Parsing a genbank file and outputting specific feature information to a csv usin
20 months ago by Andrzej Zielezinski 11k
2
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0
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5.2k
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Comment: Comment: get the uniprot accession from ensembl protein ID
20 months ago by Andrzej Zielezinski 11k
2
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1
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905
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Answer: Answer: Parsing a genbank file and outputting specific feature information to a csv usin
20 months ago by Andrzej Zielezinski 11k
3
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1
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666
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Answer: Answer: extracting data from genbank file
20 months ago by Andrzej Zielezinski 11k
0
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1
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1.7k
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Answer: Answer: From fastq files to fasta
20 months ago by Andrzej Zielezinski 11k
2
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0
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899
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Answer: Answer: how to filter fasta file?
20 months ago by Andrzej Zielezinski 11k
1
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1
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1.3k
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Comment: Comment: BLAST, set a limit to the number of hits in output
20 months ago by Andrzej Zielezinski 11k
1
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0
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2.2k
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Comment: Comment: Sequence identity between two protein sequences
20 months ago by Andrzej Zielezinski 11k
3
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1
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2.2k
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Answer: Answer: Sequence identity between two protein sequences
20 months ago by Andrzej Zielezinski 11k
0
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0
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1.2k
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Comment: Comment: Python complex formula using the items of a dictionary (or a list of dictionarie
20 months ago by Andrzej Zielezinski 11k
5
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2
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1.2k
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Answer: Answer: Python complex formula using the items of a dictionary (or a list of dictionarie
20 months ago by Andrzej Zielezinski 11k
4
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1
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672
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Answer: Answer: Advanced search for the sequences on NCBI website
21 months ago by Andrzej Zielezinski 11k
4
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0
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848
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Answer: Answer: How a fastq.gz file is formatted?
22 months ago by Andrzej Zielezinski 11k
3
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1
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1.3k
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Answer: Answer: How can I remove the sequences that contain ambiogous amino acids from a multipl
22 months ago by Andrzej Zielezinski 11k
3
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0
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1.1k
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Answer: Answer: Precision-recall curve to compare metagenome classifiers to a gold standard - Is
22 months ago by Andrzej Zielezinski 11k
0
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0
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1.4k
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Comment: Comment: Only getting 25 results from UniProt REST ID Mapping
22 months ago by Andrzej Zielezinski 11k
4
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1
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1.4k
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Answer: Answer: Only getting 25 results from UniProt REST ID Mapping
22 months ago by Andrzej Zielezinski 11k
0
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0
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650
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Comment: Comment: How many nr database subdirectories are there?
22 months ago by Andrzej Zielezinski 11k
4
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1
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1.2k
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Answer: Answer: UniProt REST Mapping Problem
22 months ago by Andrzej Zielezinski 11k
0
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1
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851
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Answer: Answer: virus classification
2.2 years ago by Andrzej Zielezinski 11k
1
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1
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916
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Comment: Comment: Too Many Protein Sequences To Align, Advice?
2.2 years ago by Andrzej Zielezinski 11k
2
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1
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916
views
Answer: Answer: Too Many Protein Sequences To Align, Advice?
2.2 years ago by Andrzej Zielezinski 11k
3
votes
2
replies
741
views
Ortholog clusters in Bacteria
orthologs gene family bacteria GtDB
updated 2.2 years ago by ★ 27k • written 2.2 years ago by 11k
0
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0
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691
views
Comment: Comment: Can ETE3 list all bacterial species present in NCBI Taxonomy?
2.2 years ago by Andrzej Zielezinski 11k
1
vote
2
replies
691
views
Can ETE3 list all bacterial species present in NCBI Taxonomy?
NCBI ETE3 taxonomy
2.2 years ago by Andrzej Zielezinski 11k
0
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0
replies
1.4k
views
Comment: Comment: proteins global alignment using BLOSUM80
2.4 years ago by Andrzej Zielezinski 11k
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