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251
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Network Alignment
plugin Cytoscape CytoMCS
updated 23 days ago by ▴ 280 • written 24 days ago by ▴ 40
1
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2
replies
494
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ComBat-seq problem
ComBat-seq RNA-Seq batch-effect
updated 6 months ago by 43k • written 6 months ago by ▴ 40
0
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0
replies
979
views
Comment: Comment: Meta transcriptomics without test/control samples.
18 months ago by Akash D ▴ 40
0
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0
replies
979
views
Comment: Comment: Meta transcriptomics without test/control samples.
18 months ago by Akash D ▴ 40
0
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0
replies
979
views
Comment: Comment: Meta transcriptomics without test/control samples.
19 months ago by Akash D ▴ 40
0
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4
replies
979
views
Meta transcriptomics without test/control samples.
META TRANSCRIPTOMICS RNA-Seq
18 months ago by Akash D ▴ 40
0
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2
replies
366
views
Transcript Abundances Meta-transcriptome
Transcript Meta-transcriptome Abundances RNA-Seq
written 19 months ago by ▴ 40
0
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0
replies
340
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LINKING OMICS/SYSTEMS BIOLOGY
SYSTEMS OMICS TRANSCRIPTOMICS GENOMICS BIOLOGY PROTEOMICS
19 months ago by Akash D ▴ 40
2
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3
replies
704
views
PAN GENOME versus REFERENCE GENOME
PAN GENOME ALIGNMENT
updated 20 months ago by 3.6k • written 20 months ago by ▴ 40
5
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7
replies
1.4k
views
6 follow
Pathway Enrichment
KEGG ORA ENRICHMENT PATHWAY
updated 23 months ago by 142k • written 23 months ago by ▴ 40
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0
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1.4k
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Comment: Comment: Pathway Enrichment
23 months ago by Akash D ▴ 40
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0
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1.4k
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Comment: Comment: Pathway Enrichment
updated 23 months ago by 142k • written 23 months ago by ▴ 40
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0
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704
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Comment: Comment: TRANSCRIPTINAL REGULATORY NETWORK MODULES
23 months ago by Akash D ▴ 40
0
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1
reply
704
views
Comment: Comment: TRANSCRIPTINAL REGULATORY NETWORK MODULES
23 months ago by Akash D ▴ 40
0
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4
replies
704
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TRANSCRIPTINAL REGULATORY NETWORK MODULES
REGULATORY MODULES RNA-SEQ TRANSCRIPTINAL NETWORK
23 months ago by Akash D ▴ 40
0
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0
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1.1k
views
Comment: Comment: GSEA: what does 'enriched' and TOP 'X' enriched process/pathways mean?
2.3 years ago by Akash D ▴ 40
0
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1
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1.1k
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Comment: Comment: GSEA: what does 'enriched' and TOP 'X' enriched process/pathways mean?
2.3 years ago by Akash D ▴ 40
0
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1
reply
1.1k
views
Comment: Comment: GSEA: what does 'enriched' and TOP 'X' enriched process/pathways mean?
2.3 years ago by Akash D ▴ 40
1
vote
6
replies
1.1k
views
GSEA: what does 'enriched' and TOP 'X' enriched process/pathways mean?
KEGG RNA-Seq GO
2.3 years ago by Akash D ▴ 40
0
votes
1
reply
520
views
find gene belongs to which pathway
Signal Crosstalk DEG Pathway
updated 2.3 years ago by 21k • written 2.3 years ago by ▴ 40
0
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0
replies
441
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What does 'Topological Rewiring' in Regulatory Network Analysis actually mean?
Networks RNA-Seq Regulatory
2.3 years ago by Akash D ▴ 40
0
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0
replies
1.5k
views
Comment: Comment: what are Differentially Expressed Genes?
2.4 years ago by Akash D ▴ 40
0
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1
reply
582
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Biological Process V/S Biological Pathway?
RNA-seq KEGG GSEA GO
updated 2.4 years ago by ▴ 20 • written 2.4 years ago by ▴ 40
8
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6
replies
1.5k
views
what are Differentially Expressed Genes?
Genes Differentially Expressed RNA-Seq Gene regulation
2.4 years ago by Akash D ▴ 40
0
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0
replies
1.5k
views
Comment: Comment: what are Differentially Expressed Genes?
2.4 years ago by Akash D ▴ 40
0
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0
replies
469
views
Find Log2FC values from qPCR data
values Log2FC RNA-Seq CT qPCR
2.4 years ago by Akash D ▴ 40
0
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0
replies
1.1k
views
Comment: Comment: LOG2FCs representation
2.4 years ago by Akash D ▴ 40
2
votes
2
replies
1.1k
views
LOG2FCs representation
LOG2FC DESeq2 PCR
updated 12 months ago by 43k • written 2.4 years ago by ▴ 40
0
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0
replies
787
views
Comment: Comment: Fellowship
2.5 years ago by Akash D ▴ 40
0
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2
replies
787
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Looking for research fellowships in PhD
Fellowship PhD Project
updated 2.5 years ago by 21k • written 2.5 years ago by ▴ 40
0
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0
replies
1.5k
views
Comment: Comment: RNA-Seq and qPCR
2.5 years ago by Akash D ▴ 40
1
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1
reply
1.5k
views
Comment: Comment: RNA-Seq and qPCR
2.5 years ago by Akash D ▴ 40
9
votes
6
replies
1.5k
views
RNA-Seq and qPCR
trends RNA-Seq qPCR- and correlation
2.5 years ago by Akash D ▴ 40
0
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1
reply
1.5k
views
Answer: Answer: RNA-Seq and qPCR
2.5 years ago by Akash D ▴ 40
0
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0
replies
487
views
Different no of 'unknown/class u' transcripts in merged.gtf and final.gtf files
Cufflinks StringTie GffCompare RNA-Seq
2.9 years ago by Akash D ▴ 40
0
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0
replies
717
views
extract transcripts with particular class code in Cuff/GffCompare
GffCompare Class CuffCompare code RNA-Seq
2.9 years ago by Akash D ▴ 40
0
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0
replies
1.6k
views
Class code selection ; GffCompare ; Novel transcript
codes GffCompare Class RNA-Seq StringTie
2.9 years ago by Akash D ▴ 40
0
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0
replies
617
views
trmap alternative for gffcompare?
GffCompare Novel-Transcripts StringTie RNA-Seq
3.0 years ago by Akash D ▴ 40
0
votes
0
replies
724
views
Novel transcript class code GffCompare?
Novel-Transcripts GffCompare RNA-Seq
3.0 years ago by Akash D ▴ 40
0
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0
replies
2.2k
views
Comment: Comment: Download and install StringTie
3.0 years ago by Akash D ▴ 40
1
vote
3
replies
2.2k
views
Download and install StringTie
StringTie RNA-Seq
updated 3.0 years ago by 142k • written 3.0 years ago by ▴ 40
0
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0
replies
1.7k
views
Comment: Comment: Genome annotation file GFF3 and GTF same? interchangeable?
3.0 years ago by Akash D ▴ 40
0
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0
replies
5.5k
views
Comment: Comment: human genome toplevel files
3.0 years ago by Akash D ▴ 40
0
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0
replies
2.8k
views
Comment: Comment: Reference Genome dna, rm or sm??
3.0 years ago by Akash D ▴ 40
1
vote
2
replies
746
views
Cytoscape JSON file format and STYLE storage
Cytoscape Styles JSON
updated 14 months ago by 43k • written 3.0 years ago by ▴ 40
2
votes
2
replies
2.8k
views
Reference Genome dna, rm or sm??
unmaksed Reference masked genome
3.0 years ago by Akash D ▴ 40
6
votes
4
replies
1.7k
views
Genome annotation file GFF3 and GTF same? interchangeable?
GTF GFF3 NGS ANNOTATION
3.0 years ago by Akash D ▴ 40
0
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0
replies
2.5k
views
Comment: Comment: StringTie FPKM output to DESeq2 input
3.0 years ago by Akash D ▴ 40
3
votes
6
replies
2.5k
views
StringTie FPKM output to DESeq2 input
Cufflinks DESeq2 RNA-Seq StringTie
updated 21 months ago by ▴ 30 • written 3.0 years ago by ▴ 40
0
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1
reply
2.5k
views
Comment: Comment: StringTie FPKM output to DESeq2 input
3.0 years ago by Akash D ▴ 40
52 results • Page 1 of 2
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