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8
votes
16
replies
5.3k
views
9 follow
visualize CNV data based on WGS
CNV
updated 8 weeks ago by
clealk
▴ 50 • written 6.3 years ago by
Bogdan
★ 1.4k
1
vote
0
replies
306
views
Forum:
list of bioinformatics tools in cancer genomics
mutations
CNA
cancer
genomics
LOH
updated 3 months ago by
Pierre Lindenbaum
161k • written 3 months ago by
Bogdan
★ 1.4k
0
votes
0
replies
292
views
filtering SNV/INDEL in tumor-only WGS samples
Tumor-only
samples
6 months ago by
Bogdan
★ 1.4k
0
votes
0
replies
477
views
filtering variants in a Strelka2 VCF file based on AD and AF
Filter
VCF
7 months ago by
Bogdan
★ 1.4k
0
votes
0
replies
348
views
Copy Number Alteration and Loss or Heterozygosity
LOH
CNA
copy-number
updated 11 months ago by
Ram
43k • written 11 months ago by
Bogdan
★ 1.4k
0
votes
1
reply
864
views
Comment:
Comment: fitting a copy number profile to know CNV signatures
12 months ago by
Bogdan
★ 1.4k
2
votes
3
replies
864
views
fitting a copy number profile to know CNV signatures
CNV
copy
number
LOH
CNA
updated 12 months ago by
LauferVA
4.2k • written 13 months ago by
Bogdan
★ 1.4k
0
votes
0
replies
352
views
allelic copy number variation
LOH
CNA
CNV
copy-number
updated 13 months ago by
Ram
43k • written 13 months ago by
Bogdan
★ 1.4k
0
votes
0
replies
363
views
alelle - specific CNA/LOH
cancer
CNV
genomics
LOH
CNA
13 months ago by
Bogdan
★ 1.4k
0
votes
0
replies
321
views
network alignment and network regression
network
15 months ago by
Bogdan
★ 1.4k
1
vote
0
replies
514
views
CNA/LOH caller on WGS data and chromosomal instability index
CNA
CNV
17 months ago by
Bogdan
★ 1.4k
0
votes
0
replies
531
views
downloading the VCF files of CCLE project (or cancer genomics WGS)
cancer
genomics
WGS
CCLE
VCF
17 months ago by
Bogdan
★ 1.4k
0
votes
0
replies
381
views
packages to detect chromoanagenesis phenomena in germline or cancer genomes
ShatterProof
17 months ago by
Bogdan
★ 1.4k
0
votes
0
replies
8.2k
views
Answer:
Answer: How does edgeR do ERCC spike-in normalization?
17 months ago by
Bogdan
★ 1.4k
0
votes
0
replies
297
views
clustering of genome segments
cancer
genomics
epigenetics
18 months ago by
Bogdan
★ 1.4k
0
votes
0
replies
742
views
Comment:
Comment: wig2bed and counting the reads in the peaks
19 months ago by
Bogdan
★ 1.4k
3
votes
2
replies
742
views
wig2bed and counting the reads in the peaks
bedtools
ChIP-seq
deeptools
bedops
updated 11 months ago by
Ram
43k • written 19 months ago by
Bogdan
★ 1.4k
2
votes
1
reply
1.0k
views
normalize and compare bigwig files
bigwig
updated 19 months ago by
Matthias Zepper
4.6k • written 19 months ago by
Bogdan
★ 1.4k
0
votes
1
reply
649
views
calling peaks in ChIP-seq datasets from bedgraph files
ChIP-seq
MACS2
updated 20 months ago by
Marco Pannone
▴ 790 • written 20 months ago by
Bogdan
★ 1.4k
0
votes
1
reply
1.9k
views
Comment:
Comment: paired-end reads, idxstats, and samtools and grep
20 months ago by
Bogdan
★ 1.4k
0
votes
0
replies
1.9k
views
Comment:
Comment: paired-end reads, idxstats, and samtools and grep
20 months ago by
Bogdan
★ 1.4k
0
votes
1
reply
1.9k
views
Comment:
Comment: paired-end reads, idxstats, and samtools and grep
20 months ago by
Bogdan
★ 1.4k
0
votes
2
replies
1.9k
views
Comment:
Comment: paired-end reads, idxstats, and samtools and grep
20 months ago by
Bogdan
★ 1.4k
0
votes
11
replies
1.9k
views
paired-end reads, idxstats, and samtools and grep
samtools
updated 20 months ago by
LauferVA
4.2k • written 20 months ago by
Bogdan
★ 1.4k
0
votes
1
reply
1.9k
views
Comment:
Comment: paired-end reads, idxstats, and samtools and grep
20 months ago by
Bogdan
★ 1.4k
0
votes
0
replies
1.9k
views
Comment:
Comment: converting bedgraph to bigwig by not using ucsc tools
21 months ago by
Bogdan
★ 1.4k
0
votes
1
reply
1.9k
views
Comment:
Comment: converting bedgraph to bigwig by not using ucsc tools
21 months ago by
Bogdan
★ 1.4k
5
votes
8
replies
1.9k
views
converting bedgraph to bigwig by not using ucsc tools
bedgraph
bigwig
21 months ago by
Bogdan
★ 1.4k
0
votes
1
reply
1.9k
views
Answer:
Answer: converting bedgraph to bigwig by not using ucsc tools
21 months ago by
Bogdan
★ 1.4k
0
votes
0
replies
1.0k
views
Comment:
Comment: CWL and Arvados
21 months ago by
Bogdan
★ 1.4k
3
votes
3
replies
1.0k
views
CWL and Arvados
CWL
workflow
manager
21 months ago by
Bogdan
★ 1.4k
0
votes
1
reply
643
views
SNV, CNA, SV
SV
CNA
SNV
updated 21 months ago by
LauferVA
4.2k • written 21 months ago by
Bogdan
★ 1.4k
2
votes
1
reply
457
views
extracting sequences from a bam file
bam
updated 21 months ago by
LChart
3.9k • written 21 months ago by
Bogdan
★ 1.4k
1
vote
3
replies
1.1k
views
comparisons between 2 ChIP-seq datasets
ChIP-seq
updated 24 months ago by
ATpoint
82k • written 24 months ago by
Bogdan
★ 1.4k
0
votes
0
replies
1.1k
views
Comment:
Comment: comparisons between 2 ChIP-seq datasets
24 months ago by
Bogdan
★ 1.4k
4
votes
3
replies
1.5k
views
computing chromothripsis on cancer genomes
snp
cnv
sv
cancer
updated 24 months ago by
Thind amarinder
▴ 340 • written 5.8 years ago by
Bogdan
★ 1.4k
0
votes
0
replies
1.5k
views
Comment:
Comment: saving png images and X11
2.0 years ago by
Bogdan
★ 1.4k
0
votes
2
replies
602
views
browser to visualize single cell data
scATAC-seq
updated 2.0 years ago by
lieven.sterck
15k • written 2.0 years ago by
Bogdan
★ 1.4k
0
votes
0
replies
341
views
HIC databases
Hi-C
2.1 years ago by
Bogdan
★ 1.4k
2
votes
1
reply
613
views
scATAC-seq
scATAC-seq
2.1 years ago by
Bogdan
★ 1.4k
2
votes
0
replies
613
views
Answer:
Answer: scATAC-seq
2.1 years ago by
Bogdan
★ 1.4k
0
votes
0
replies
422
views
ssvQC
ssvQC
2.2 years ago by
Bogdan
★ 1.4k
0
votes
0
replies
1.5k
views
Comment:
Comment: saving png images and X11
2.2 years ago by
Bogdan
★ 1.4k
0
votes
5
replies
1.5k
views
saving png images and X11
scripting
saving
images
and
2.0 years ago by
Bogdan
★ 1.4k
0
votes
1
reply
562
views
HOMER on AWS
HOMER
updated 15 days ago by
clairechung112
• 0 • written 2.3 years ago by
Bogdan
★ 1.4k
0
votes
1
reply
660
views
compare the background levels in two chip-seq experiments
ChIPseq
updated 2.3 years ago by
seidel
11k • written 2.3 years ago by
Bogdan
★ 1.4k
0
votes
0
replies
613
views
Comment:
Comment: interchromosomal interactions and 4C
2.3 years ago by
Bogdan
★ 1.4k
0
votes
2
replies
613
views
interchromosomal interactions and 4C
4C
2.3 years ago by
Bogdan
★ 1.4k
0
votes
0
replies
851
views
Comment:
Comment: compare ChIP-seq datasets in two cell lines
2.3 years ago by
Bogdan
★ 1.4k
0
votes
1
reply
851
views
Comment:
Comment: compare ChIP-seq datasets in two cell lines
2.3 years ago by
Bogdan
★ 1.4k
386 results • Page
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