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Comment: Comment: Seurat v5 and how to correctly integrate across multiple experiments
5 days ago by Papyrus ★ 2.9k
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236
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Answer: Answer: Circos Plot to Visualize Chromatin Accessibility Changes from ATAC-seq Data
6 days ago by Papyrus ★ 2.9k
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209
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Answer: Answer: Is therer any suggestions on mapping rate of WGBS data?
14 days ago by Papyrus ★ 2.9k
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470
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Comment: Comment: DESeq: too low p-value for RNAseq
6 weeks ago by Papyrus ★ 2.9k
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470
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Comment: Comment: DESeq: too low p-value for RNAseq
6 weeks ago by Papyrus ★ 2.9k
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411
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Comment: Comment: representing PCs as marginal distribution on x and Y acis
9 weeks ago by Papyrus ★ 2.9k
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411
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Answer: Answer: representing PCs as marginal distribution on x and Y acis
9 weeks ago by Papyrus ★ 2.9k
2
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2
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499
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Answer: Answer: Tutorial for analyzing WGBS data
10 weeks ago by Papyrus ★ 2.9k
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847
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Comment: Comment: How to interpret the output from a DESeq2 WALD test analysis in R to compare gen
12 weeks ago by Papyrus ★ 2.9k
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2
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847
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Comment: Comment: How to interpret the output from a DESeq2 WALD test analysis in R to compare gen
12 weeks ago by Papyrus ★ 2.9k
2
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1
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400
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Answer: Answer: Do people use M-value in WGBS?
5 months ago by Papyrus ★ 2.9k
2
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1
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643
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Comment: Comment: 4 Fastq files for a single run generated by 10X
5 months ago by Papyrus ★ 2.9k
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387
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Comment: Comment: Fisher exact test on different gene sets
6 months ago by Papyrus ★ 2.9k
2
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649
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Answer: Answer: IDAT or Txt MINFI or LIMMA?
9 months ago by Papyrus ★ 2.9k
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1.3k
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Comment: Comment: Gene Set Comparison Without Expression Data
9 months ago by Papyrus ★ 2.9k
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1.3k
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Comment: Comment: Gene Set Comparison Without Expression Data
9 months ago by Papyrus ★ 2.9k
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1.3k
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Comment: Comment: Gene Set Comparison Without Expression Data
9 months ago by Papyrus ★ 2.9k
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979
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Answer: Answer: QC Illumina EPIC array: Removing SNPs at CpG sites
9 months ago by Papyrus ★ 2.9k
2
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1
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832
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Answer: Answer: count number of GC for a given genomic ranges
9 months ago by Papyrus ★ 2.9k
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1
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803
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Answer: Answer: DMR Analysis for RRBS: what annotation file to I use?
9 months ago by Papyrus ★ 2.9k
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0
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523
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Comment: Comment: minfi::getQC - is default badsamplecutoff of 10.5 always appropriate? ~half of s
9 months ago by Papyrus ★ 2.9k
1
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0
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543
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Comment: Comment: Are there pipelines to analyze the Quality Controls for ATAC-seq and ChIP-seq da
10 months ago by Papyrus ★ 2.9k
1
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0
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995
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Answer: Answer: How to perfrom a statistical test on a 3-way Venn Diagram
10 months ago by Papyrus ★ 2.9k
1
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1
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1.3k
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Comment: Comment: Gene Set Comparison Without Expression Data
10 months ago by Papyrus ★ 2.9k
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3.0k
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Comment: Comment: Tools for bulk RNA-seq celltype deconvolution
10 months ago by Papyrus ★ 2.9k
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7
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3.0k
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Tools for bulk RNA-seq celltype deconvolution
composition deconvolution bulk RNA-seq celltypes
updated 10 months ago by • 0 • written 2.9 years ago by ★ 2.9k
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1.3k
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Comment: Comment: Gene Set Comparison Without Expression Data
10 months ago by Papyrus ★ 2.9k
2
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1
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1.3k
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Answer: Answer: Gene Set Comparison Without Expression Data
10 months ago by Papyrus ★ 2.9k
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0
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790
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Comment: Comment: Boxplot of contrasts and genes together
11 months ago by Papyrus ★ 2.9k
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1
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790
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Answer: Answer: Boxplot of contrasts and genes together
11 months ago by Papyrus ★ 2.9k
2
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1
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909
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Comment: Comment: Blacklist for bacterial genome [ChIPseq]?
11 months ago by Papyrus ★ 2.9k
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0
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510
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Comment: Comment: Choosing the right batch effect control algorithm for bulk RNA-seq data meta-ana
11 months ago by Papyrus ★ 2.9k
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1
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1.2k
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Comment: Comment: Obtain counts for specific genes with ChIP-seq data without peak calling
11 months ago by Papyrus ★ 2.9k
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1
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1.0k
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Comment: Comment: Screen for transcription factors/genes that maybe the cause of a disease/differe
11 months ago by Papyrus ★ 2.9k
1
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1
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1.0k
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Comment: Comment: Screen for transcription factors/genes that maybe the cause of a disease/differe
11 months ago by Papyrus ★ 2.9k
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0
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367
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Comment: Comment: Suggestion for enrichment analysis for small microarray set.
11 months ago by Papyrus ★ 2.9k
1
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1
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1.0k
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Comment: Comment: Screen for transcription factors/genes that maybe the cause of a disease/differe
11 months ago by Papyrus ★ 2.9k
1
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1
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1.2k
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Comment: Comment: Obtain counts for specific genes with ChIP-seq data without peak calling
11 months ago by Papyrus ★ 2.9k
1
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1
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1.2k
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Answer: Answer: Obtain counts for specific genes with ChIP-seq data without peak calling
11 months ago by Papyrus ★ 2.9k
1
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1
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511
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Comment: Comment: Filtering content in heatmap to highest values
11 months ago by Papyrus ★ 2.9k
1
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2
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984
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Answer: Answer: Reorder GO terms using R
11 months ago by Papyrus ★ 2.9k
3
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1
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1.7k
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Comment: Comment: Annotating TSS: By Transcript or by Gene? Code Validation Help Needed!
12 months ago by Papyrus ★ 2.9k
0
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0
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1.1k
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Comment: Comment: Splitting heatmap
12 months ago by Papyrus ★ 2.9k
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1
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1.1k
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Comment: Comment: Splitting heatmap
12 months ago by Papyrus ★ 2.9k
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1
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1.1k
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Comment: Comment: Splitting heatmap
12 months ago by Papyrus ★ 2.9k
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1
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1.2k
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Answer: Answer: scRNA-seq: How does cell number in clusters affect the number of DE genes?
13 months ago by Papyrus ★ 2.9k
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0
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490
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Comment: Comment: pipeline for correlation of RNASeq and Methylation data
13 months ago by Papyrus ★ 2.9k
2
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1
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966
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Comment: Comment: Testing overlap significance of three gene sets using the hypergeometric distrib
13 months ago by Papyrus ★ 2.9k
1
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0
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502
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Comment: Comment: DMRcaller Min. Reads per Cytosine
15 months ago by Papyrus ★ 2.9k
1
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0
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402
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Comment: Comment: linking methylation/SNPs to gene expression
15 months ago by Papyrus ★ 2.9k
326 results • Page 1 of 7
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